Citrobacter freundii CFNIH1: CFNIH1_18875
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Entry
CFNIH1_18875 CDS
T03077
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cfd
Citrobacter freundii CFNIH1
Brite
KEGG Orthology (KO) [BR:
cfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfd03032
]
CFNIH1_18875
03400 DNA repair and recombination proteins [BR:
cfd03400
]
CFNIH1_18875
Enzymes [BR:
cfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CFNIH1_18875
DNA replication proteins [BR:
cfd03032
]
Prokaryotic type
DNA Topoisomerases
CFNIH1_18875
DNA repair and recombination proteins [BR:
cfd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CFNIH1_18875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
CK_II_beta
Toprim_4
DUF4795
Motif
Other DBs
NCBI-ProteinID:
AHY13514
LinkDB
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Position
complement(3911123..3913720)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSATKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDARYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDARYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIGADTTTPGGDALPLEVTH
QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVREYISDNFGKKYLPESANQYASKEN
SQEAHEAIRPSDVAVQAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRILPAVDKGDTLTLVELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDSLDQVANHEAEWKGVLDNFFTDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQTDPDGNKSMVRFSRKTKQQYV
AAEKDGKATGWSAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgactacgtggtgaaatccagcgttggtcatatccgtgatttgccgaccagt
ggctcagcaactaaaaagagcgccgactcaacctccaccaaaacggctaaaaagcccaaa
aaggatgaacgtggcgctctcgtcaaccgcatgggtgttgacccgtggcacaactgggat
gcgcgctatgaagtgctgcctggtaaagagaaagttgtttctgaactgaagcaactggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaggccattgca
tggcacctgcgggaagtgatcggcggcgatgacgcacgctacagccgtgtggtgtttaac
gaaattactaaaaacgctattcgtcaggcgtttgaaaaaccgggcgaactgaacatcgac
cgggttaacgcgcaacaggcgcgccgctttatggaccgcgtggtgggctatatggtgtcg
ccgctgctgtggaaaaaaattgcgcgtggtctgtcagcaggccgcgtacagtcggttgcc
gtgcgtctggtggttgagcgcgaacgcgaaatcaaagcatttgttccagaagagttctgg
gaaattggtgctgacacgaccacgcctggaggcgatgcgttgccgcttgaggtgacgcac
cagaatgataaaccgttccgcccggtcaatcgggaacaaacgcttgccgctgtcagcctg
ttggaaaaagcgcgctatagcgttctggaacgtgaagataaaccgaccagcagcaagcca
ggcgcgccgtttattacctccacgctacagcaggctgcgagtacgcgactgggttttggc
gtgaagaaaaccatgatgatggcgcagcgcttgtatgaagcgggctacatcacctatatg
cgtactgactcaaccaacctgagccaggatgcggtgaacatggttcgcgagtacatcagc
gataattttggcaaaaaatatctgccggagagcgcgaaccagtacgccagcaaagagaac
tctcaggaagcgcacgaagctatccgtccttccgatgtcgccgtacaggcggaatcgctg
aaagacatggaagctgatgcgcaaaaactgtaccaactgatctggcgtcaatttgttgcc
tgtcagatgacgccggcgaaatacgactccaccaccttaaccgtgggcgcgggtgatttc
cgcctgaaagcgcgtggtcgtattctgcgtttcgatggctggaccaaagtgatgcctgca
ttgcgtaagggcgatgaagatcgcatcttaccggccgtggataaaggcgatacgttgacg
cttgtcgaactgacgccagcgcaacactttaccaaaccgcctgcacgtttcagtgaagcc
tcgctggttaaagagcttgaaaagcggggtattggtcgtccatcaacgtatgcgtcgatt
atttccacgattcaggatcgcggctatgttcgtgttgagaaccgtcgcttctatgctgaa
aaaatgggtgaaatcgtcaccgatcgtctggaagaaaacttccgcgaattgatgaactac
gattttaccgcgcagatggaagacagcctcgaccaggtggcgaatcacgaagccgaatgg
aaaggcgtactcgacaacttcttcaccgattttactcagcaactggataaagccgaaaaa
gatcctgaagagggcggtatgcgtccgaaccagatggtgctgaccagtattgattgcccg
acctgcggacgcaagatgggtattcgtaccgccagcaccggcgttttcctcggctgttcc
ggctatgcgctgtcgccgaaagagcgttgcaaaaccaccattaacctggtgccggaaaac
gaagtgctgaacgtgctggaaggcgatgacgcggaaacgaacgctctgcgcgccaaacgt
cgctgccagaagtgcggtacggcgatggacagctaccttatcgatcctaagcgtaagctg
catgtatgtggtaataacccgacctgcgacggctacgagatcgaagagggtgaattccgc
atcaaggggtatgacggtcctatcgttgagtgcgaaaaatgtggttctgaaatgcacctg
aaaatggggcgtttcggtaagtacatggcgtgtaccaacgacgagtgcaaaaacactcgt
aagatcctgcgtaacggtgaagtcgctccgccgaaagaagatccggttccgctgccggaa
ctgccgtgtgaaaaatctgacgcgtattttgtgttacgtgatggcgcggcaggtatcttc
ctggcggcaaatacgttcccgaaatcacgtgagacccgcgcgccgttagtggaagagctg
taccgcttccgcgatcgtctgccggaaaaactgcgctatctggcagacgcgccgcagact
gacccggatggcaacaagtccatggttcgtttcagccgtaaaaccaagcagcaatacgtt
gccgctgagaaagacggtaaggcgaccggttggtcagcgttctttgttgacggtaaatgg
gtagaagggaagaaataa
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