Citrobacter freundii CFNIH1: CFNIH1_24285
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Entry
CFNIH1_24285 CDS
T03077
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
cfd
Citrobacter freundii CFNIH1
Brite
KEGG Orthology (KO) [BR:
cfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cfd03009
]
CFNIH1_24285
Enzymes [BR:
cfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFNIH1_24285
Ribosome biogenesis [BR:
cfd03009
]
Prokaryotic type
rRNA helicases
CFNIH1_24285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHY14539
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All DBs
Position
5011250..5012578
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AA seq
442 aa
AA seq
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MTVTTFSELELDESLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKNTHLDIATITGGVAYMNHM
EVFSENQDIVVATTGRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTMLFSATLEGDAIKDFAERLLEDPVEVSADPSTRERKKIHQFYYRADDIEHKTALLI
HLLKQPEATRSIVFVRKRERVHELAGWLRQAGINNCYLEGEMVQIKRNEAIKRLTDGRVN
VLVATDVAARGIDIPDVSHVFNYDMPRSGDAYLHRIGRTGRAGRKGTAISLVEAHDHLLL
GKASRYIDEPLKARVIDELRPTTRAPSEKSNGKPSKKVLAKRAEQKAKEKEKPRVKKRHR
DAKNIGKRRKPSGTAPQQSDKE
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaacgactttttccgaacttgaactcgatgaaagccttctggatgccctccag
gaaaaaggtttcactcgcccgaccgccattcaggctgccgccattccgcctgcgctcgat
ggccgtgatgtactcggttctgcgccgacaggcaccggtaaaacggcggcatatttgctg
ccagcgttgcagcacctgctcgacttcccgcgcaaaaaatctggcccaccgcgcatttta
attctgacgccaacgcgcgaactggcgatgcaggttgccgaccacgcccgtgaactggcg
aagaatacgcatctggatatcgccacaattaccggcggcgtggcttacatgaaccatatg
gaagtctttagcgaaaaccaggatatcgtggtcgccaccaccggtcgcctgctgcaatac
atcaaagaagaaaatttcgactgccacgcggttgaaacgctgatcctcgatgaggcagac
cgtatgctggacatgggctttgcccaggacatcgaacatatcgccggtgaaacccgctgg
cgtaagcagacgatgttattctctgccacgctggaaggcgacgcgattaaagattttgcc
gagcgcctgctggaggatccggttgaggtttcggcggatccatcgacccgcgaacgcaag
aagatccatcaattttactaccgtgccgatgacattgagcacaaaacggctctgctgatc
catctgttaaaacagccggaagcgacccgttcgattgtttttgtacgtaagcgtgagcgt
gtgcacgagctggcaggctggctgcgccaggctggcattaataactgctatctcgaaggc
gagatggtacagatcaagcgtaacgaagcgatcaaacgcctgaccgatggtcgtgtgaat
gtactggttgcgaccgatgttgccgctcgcgggatcgacattcctgatgttagccacgtg
tttaactacgacatgccgcgcagtggtgatgcctatctacaccgcattggccgtaccggc
cgcgctggccgtaaaggtaccgcgatttctctggttgaagcgcacgaccacctgctgctt
ggcaaagcgagccgctatatcgacgaaccgctgaaggcgcgcgttattgacgaactgcgt
ccgacaactcgcgcgccaagtgagaaatctaacggcaagccgtccaaaaaagtgctggca
aagcgcgccgagcaaaaagccaaagaaaaagagaaaccgcgcgtgaagaaacgtcaccgc
gacgccaaaaatatcggcaaacgtcgtaagccgagcggaacggctccccagcagtccgac
aaagagtaa
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