Chlamydia felis Fe/C-56: CF0139
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Entry
CF0139 CDS
T00332
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor-superfamily II helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfe
Chlamydia felis Fe/C-56
Pathway
cfe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CF0139 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfe03400
]
CF0139 (mfd)
Enzymes [BR:
cfe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CF0139 (mfd)
DNA repair and recombination proteins [BR:
cfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CF0139 (mfd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
AAA_19
ADDB_N
UB2H
Motif
Other DBs
NCBI-ProteinID:
BAE80911
UniProt:
Q255X7
LinkDB
All DBs
Position
complement(165041..168295)
Genome browser
AA seq
1084 aa
AA seq
DB search
MAMDFDPVKLNLSSLFEIINTSTPLLIENIRPGARGFLAAKFFHERKKSVIMITTRSCID
DLLEDLSSFLGFPPLEFPSSEIDLSPKLVNIDAVGKRDKILYELCEKKSPVFCVTTLKAL
LEKTRSPKDTVHQHLDIQVGDLLDPDMMIDLCKNLGYRHETLARDKGEFAYRGGIIDIFP
LSSQEPFRIEFWGEKIISIRPFNPSDQLSTGKVSKLSISPATKDSGKEVLSHCLLDYFHT
PPAFIFDNLARLEDDFSEISGTLSSLPNRFLPIQYLCERALQSPTIFFEEKNFPNAHTVK
NNEVNIEVFHRDVKASRLVAPFVYPNETIDKHENPPLGFLQKLQEYIPNKEPLNIAVYNT
KSKSLKEARALIETLEENSIHIYEKSGNLSSSFALVKERFAAISLSEFTSTKILRRQKQR
NYFSVTTEEVFVPIPGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYADKARLYVPS
DQAYLISRYVGTSEKTPDLHNLNGSKWKRSRDLSEKSLVLYAEKLLQLEAQRSTAPSFIY
PPHGEEVMKFAERFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAV
KAVCDGHRQVIVMVPTTILANQHYETFSQRMAGLPIKIAVLSRFSEGKAKKKIFEDTAKG
DVDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPMVDCLTVSATPIPRT
LYMSLSGARDLSLITMPPLDRLPVSTFILEHNDETLSAALRHELLRGGQAYVIHNRIESI
FRLGNTIRTLVPEARIAVAHGQMSSDELASIFQKFKDQEINVLVATALIENGIDIPNANT
ILVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVPHLDRLSVPAAKRLEALNKQEYGGGM
KIALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNTSPALFNDDVKIEF
PYKSRIPDTYIDLASMRIEFYQKIGGAEDAEQLDLIKEEMRDRFGPLPDEVLWLFALAQL
RLFALKHNISSIKGTGNALYIQQNHGKTEQIKKTLPYSLSPTPELLVSEVLESIEKAFPL
NTPC
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggatttcgacccagttaaattaaatctatctagtctttttgaaataattaac
acctctactccattactcatagaaaacatccgtcccggagctcgtgggtttttagctgcc
aagtttttccacgagagaaaaaaatctgtgataatgatcaccactcgctcttgtattgac
gatttactagaagatctctcttcctttttaggatttcctcctctggagttcccctcgtca
gaaattgacttgtctcccaaattggtcaatatcgatgctgtggggaaacgtgacaagatt
ctgtatgaattatgtgagaagaaatcccctgtattttgcgtaacaacattaaaagcttta
ctagaaaaaacccgctctccgaaagacacggttcatcaacatttagatatccaagttggg
gatctgctagatcctgatatgatgatcgatctatgtaaaaacttaggctatcgccatgaa
actctcgcaagagataaaggcgagtttgcttatcgaggaggaattattgacatctttcct
ctatcttctcaagaacccttccgaatagagttctggggagaaaaaataatctccattcgt
cctttcaacccctcagaccaactctcaacaggaaaggtttctaaactttcaatatctcct
gcgacaaaagactctgggaaagaagttctttcgcattgcctgttagattacttccatacc
cctccggcgtttatctttgataatttagctaggttagaagatgatttttctgagatttca
ggaacattatcctccttgcccaaccgctttttacctattcaatatctttgtgaacgcgca
ttgcaatctccgacgattttctttgaagaaaagaacttccctaatgcccacactgttaag
aacaatgaagtaaatatcgaagtttttcatcgtgatgttaaagcttcacgcctcgttgcc
ccctttgtttatcctaatgaaactatcgataagcatgaaaacccccctctgggttttcta
caaaaacttcaggaatatattcctaataaagaaccgcttaacattgcggtctataatacg
aaatccaagtctttgaaagaggctcgagccttaatagaaactctagaggaaaactccata
cacatttacgaaaaatctgggaatctctcctctagctttgctcttgttaaagaaaggttt
gcagctatttccctttcagaatttacttctacaaagatactgagaagacaaaaacagaga
aattatttttctgtaactactgaggaagtttttgtccctattcctggggagactgttgtg
catcttcacaatgggatcgggaagtttatcggaatggaaaaaaaacccaaccatttaaat
atagaaaccgattacctagtccttgaatatgctgacaaagcaagactttatgttccttca
gatcaagcttatctaatttctcgttacgtagggacttctgaaaaaactcctgatcttcat
aatcttaatggctctaaatggaaaagatctcgagatctctctgaaaagtctctcgtatta
tacgctgaaaagctgcttcagctcgaagctcagcgttctacagctccttcttttatttat
cctccccatggtgaggaagtaatgaaatttgcagaaagatttccctatgaagaaactccc
gatcaattaaaagctattgaacaaatttactctgacatgatgtctgataagctcatggat
cgtttaatttgtggagatgcgggatttgggaaaacagaagttattatgcgagctgctgta
aaagctgtttgtgatggtcatcgacaagttatcgttatggttcctacgaccattctagct
aatcaacattacgagactttctctcagcgcatggcaggattacctatcaaaatcgctgtt
ctttcacgattttctgaaggaaaagcaaagaaaaaaatcttcgaagatactgctaagggc
gatgttgatattttaattggcacgcacaagttaataaacaaaaacctagaattcaaaaat
cctggcttactgattattgatgaggaacaacgttttggtgttaaagttaaagacttcctc
aaagagcgctatcctatggtagattgccttacggtatcagcaacgcccattcctagaaca
ttatacatgtctttatccggggctagggatctctctttaatcaccatgccaccgttagat
cgacttcctgtctctacatttattttagagcataacgatgagacactgtcagctgctcta
cgtcatgaattacttcgtggtggtcaagcttacgttattcataaccgtattgagagtatt
ttcagattagggaatacaatacgcacgttagttcctgaagcacgtattgctgttgcccat
gggcagatgtcttcagatgaattagcttctattttccaaaagtttaaagatcaagaaatc
aatgtgcttgtagcaacagcgctcatagaaaatggtattgatattcccaatgccaacact
attttggtagaccaggcggacaaattcggcatggcagatctttatcagatgaaaggtaga
gtaggtagatggaatagaaaagcctactgttatttcctagttccccatttagataggtta
tccgtacctgcagcaaaacgtttagaagcgttgaataaacaagaatacggcgggggaatg
aaaattgctctccatgatttagagattcgcggagctgggaatatcttggggactgatcaa
tcggggcatataagtgccataggattcaatctctattgtaaactattgaaaaaaactgtc
gcagctttgaaaaacaatacctctccggcgctattcaatgatgatgtcaagatagaattc
ccttacaagtctcggattcctgatacttatattgacttggcatctatgcgtatagaattc
tatcagaaaataggaggtgctgaagatgcggaacaacttgatcttataaaagaggaaatg
cgcgatcgctttggtccccttcctgatgaggtattatggttattcgccttagctcaatta
cgtctgtttgctctaaagcacaatatttctagtattaaaggcacgggcaacgctttgtat
atccaacaaaatcatggaaaaacggagcaaataaagaaaacattaccctattctttatct
ccaactccagaactgctagtatcagaagttttagaatctatagagaaagcttttcctcta
aataccccttgttaa
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