Ctenocephalides felis (cat flea): 113366381
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Entry
113366381 CDS
T08578
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cfel
Ctenocephalides felis (cat flea)
Pathway
cfel03013
Nucleocytoplasmic transport
cfel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfel00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113366381
03015 mRNA surveillance pathway
113366381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfel03019
]
113366381
Enzymes [BR:
cfel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113366381
5.6.2.5 RNA 5'-3' helicase
113366381
Messenger RNA biogenesis [BR:
cfel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113366381
mRNA cycle factors
Common to processing body (P body) and stress granule
113366381
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
AAA_16
nSTAND3
AAA_22
SRP54
AAA_7
PhoH
AAA
AAA_26
Motif
Other DBs
NCBI-GeneID:
113366381
NCBI-ProteinID:
XP_026463766
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEGDLLGADTQGSDFDFTDFTLPSQSQTQASQLDHGQSSIQL
NGIGLKSDISKISTTTQALADLQFEEDEDELYGNRELPYHACKYCGIHEPSTVVMCNVCK
KWFCNGRGNTSGSHIINHLVRAKHKEVTLHSDGPLGETVLECYSCGVRNVFVLGFIPAKA
DSVVVLLCRQPCASQSSLKDMNWDQDQWQPLISDRSFLSWLVKVPSEQEQLRARQTSAQQ
INKLEELWKDNVEATFQDLEKPGVDEEPAQVLLRYEDGYQYQNIFGPLVKLEADYDKRLK
ESQTQADIEVRWDVGLNKKIIAYFTLAKTDSDMKLMHGDELRLRYVGELHKPWAGVGHVI
KVPDNFGDDIGLELKGNSGAPTECNSNFVVDFIWKSTSFDRMQMALRKFAVDDSSVSGYI
YHRLLGHEVEEVLFRCQLPKHFSAPNLPHLNRSQVYAVKHAIQRPLSLIQGPPGTGKTVT
SATIVYQLVKQHGVPVLVCAPSNTAVDQLTEKIHKSSLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMDTNTELKKLQQLKDETGELSSADEKRYRMLKKSSEKELLEAADVICCTCVGAG
DPRLARLKFHSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIKPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCADERKLIKIDFPWPC
PDKPMFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLKSGVKPEQIGVITPYEGQRA
YLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNV
ALTRAKYGIIIVGNPKVLSKQPLWNHLLTFYKEQKVLVEGSLNNLKESMIQFTKPKKLVN
SMNPGSHFMSTCMYDAREAMVPGSVYDRTGQMNQMYPPRPNGLDMFARTHDTVSYISQER
AQAALTNMPVPVGMFMNMSHVPPRFYNQHQQAMQARQGRRIKPNKGRTRVSSQEGTQPTP
LTQGMSQNMSQPGFSLSQAGFSQPDLSQESYMVEYQSQMDGLLSQESSFPNDRSGNSKGL
GYNSNQFSQPY
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgacgcatatggtcccagttcgcaaacccttacgtttttggacacggaggaa
ggagatttgttaggtgctgatactcaaggatcggattttgattttacagattttacttta
ccgtcacagagccaaactcaagcttctcaactcgatcatggacagagttcgattcagctt
aatggaattggccttaagtcagacatttcaaaaatatccacgactacccaagcgctagct
gatctacagtttgaggaagacgaagatgaattatatggaaatcgtgaattgccataccat
gcttgtaaatattgtggaattcatgagcccagtacggtagttatgtgcaatgtatgtaaa
aagtggttttgtaatggaagaggaaacacatcaggctcacatatcataaaccatttggtc
agagctaaacataaagaagtaacattacattctgatgggccactcggtgaaactgtcttg
gaatgttactcatgtggggttaggaacgtttttgttcttggtttcataccagcaaaggca
gactctgtagttgttttattatgtcgccagccatgtgcatcacaatcatctttaaaagat
atgaactgggatcaagatcaatggcaaccactaatttcagatagaagttttttgtcatgg
cttgtaaaagtcccatcagaacaagagcaattgcgagcaagacagacttctgctcaacaa
atcaataaattggaagaactttggaaggacaatgtagaagctacttttcaagatcttgaa
aaacctggtgtagatgaagagcctgcacaggtgttgcttcgttatgaagatggttatcaa
tatcaaaatatttttggacccttggttaagctagaagcagattatgacaaacgactgaag
gaatcacagacccaagctgacattgaagtccgatgggatgttggactgaataagaaaatc
attgcatattttactttggcaaaaacagatagcgatatgaagttgatgcatggagatgaa
ctgcgcctcagatatgtaggtgaacttcataagccatgggctggagttggacatgttatt
aaagttcctgataattttggagatgacataggtttagagcttaaaggaaattcaggagca
cctacagaatgtaattctaactttgtagttgatttcatttggaaaagtacatcgtttgat
agaatgcaaatggctttgaggaagtttgcagttgatgattcttctgtgtcaggttacatt
tatcatcgtcttcttggccatgaagttgaagaagtattatttcgatgccaattacctaaa
cattttagtgcaccaaatttaccacatttaaatagatcacaagtctatgctgtgaagcat
gccattcagcggcctttatcactcattcaaggtccgcctggtacaggaaaaactgtaaca
agtgctactattgtttatcaattagttaaacaacatggtgttccagttctggtttgtgca
ccaagtaatacagctgttgatcaattaaccgaaaaaattcataaatccagcttaaaagtt
gttagattatgtgcaaaatccagagaggctatagattctccagtaagctttttagctttg
cacaatcaaattagaaatatggacaccaatacagagttaaagaaattgcagcaattgaaa
gatgaaactggtgaattgagttcagcagatgagaaacgatataggatgttgaaaaaatct
tcagaaaaagaattgttagaagcagcagatgtaatttgttgtacatgtgttggtgccggg
gatcctagattagcgagattaaaatttcattctatattaatagatgaaagtatgcagtcc
acagaacctgagtgtatggtgcctgtggttttaggggcaaagcaattaattcttgttgga
gatcattgccagttgggccctgttgtcatgtgcaagaaggctgcaaaagcaggcttatcc
caaagtttatttgaaagattagtagtcttgggaataaaaccttttcgcctagaagtgcaa
tatagaatgcatcctgagttatctcgctttccatctaatttcttttatgaaggcagtctg
cagaatggtgtttgtgcagatgaaagaaaattaatcaaaatagattttccctggccttgt
cctgataagccaatgttctttcttgtgacacaaggccaagaagaaattgcaggatcagga
acatcatatttaaatagaacagaggctgcaaatgttgaaaaaattacgaccagattttta
aaatctggtgtcaagccagaacaaataggagttataacaccttatgaaggacagagagct
tatttagtacaatatatgcaatatcaaggaagtctacattcaaaattatatcaagaaata
gaagtagcgagtgtggatgcttttcaggggcgtgagaaagatataatcattatgtcatgt
gttagatcaaatgaacatcaaggtattggctttttaaatgatccaagaagactaaatgtt
gctctcactagggcaaaatatggaataattattgttggaaatccaaaagtattatcaaag
caaccattgtggaatcatctgttaacattttataaagaacagaaagttctagttgaaggt
tccttgaacaatttgaaggaaagcatgattcaatttacaaaaccaaagaaattagtcaat
tcaatgaatcctggatctcattttatgtcaacatgtatgtatgatgcacgggaagcaatg
gttccgggatcagtgtatgatcgcactggacaaatgaatcaaatgtatcctccaagacct
aacggtttggatatgtttgcaaggacacatgacacagtcagctacatatcccaagaaaga
gcgcaagcagccctcacaaatatgcctgttcctgtgggcatgtttatgaatatgagtcat
gttcctcccagattttataatcaacatcagcaagcaatgcaagccaggcaaggccgaaga
atcaagccaaacaagggtcgcactcgtgtttcatctcaagaaggaacgcaacccacacca
ctgactcagggcatgagtcagaatatgagccagcccggttttagtttgagccaagcagga
ttctcacagcctgatctatcacaagaatcatatatggtggagtatcaatcacagatggat
ggtttgttgtcccaggaatcatcttttccaaatgatcgttcagggaattctaaaggactt
ggctataattctaatcagttttcgcagccgtattga
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integrated database retrieval system
