Ctenocephalides felis (cat flea): 113366499
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Entry
113366499 CDS
T08578
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cfel
Ctenocephalides felis (cat flea)
Pathway
cfel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113366499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfel03019
]
113366499
Enzymes [BR:
cfel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113366499
Messenger RNA biogenesis [BR:
cfel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113366499
mRNA degradation factors
3'-5' decay
Ski complex
113366499
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
113366499
NCBI-ProteinID:
XP_026463896
LinkDB
All DBs
Position
Unknown
AA seq
1226 aa
AA seq
DB search
MKMDDNDTERLRDFILNPDIDILKLDTEPIKFNLEDISLSFDCVPCFENTTIVAERDLDT
GDIIGFKEVDNLTLAYDGRTSMSLQRAPAPPEESTMGSVMNYPFWPGGFDPPEEVLLNDD
VVLDFEDNLLVCAPGLPHGIEFPKHEPSHQERIEDLGLESVTGNITVDLLALTLDEDKFK
DIWKSDETPETTQEPAPATDSVDIDSFIPNINQDLPVLNISTSADICVKSKSLLWAEEID
ISQPVTDFEKVIPEPAHTYPFVLDTFQKQAIIKLEEHNHVFVAAHTSAGKTVVAEYAIAL
SRKHMTRXIYTSPIKALSNQKYRDFTNTFSDVGLITGDIQINSTASCLIMTTEILKSMLY
GGSDITRDLEYVIFDEVHYINDSDRGHVWEEVLILLPQHVCIVMLSATVPNTLEFANWVG
MTKRSKVYVISTAKRPVPLQHYLYTGFGGKSRDDRFLVVDADGNWLDNNYKSAQLSKRSR
QTDFRKEFGHGKLNPKQEQTMWVGLIDHLKRNNELPVIAFTLSRKRCDLNAQSLNSIDFT
SQREKNQIHRFFSRCLKRLNAPDRNLPQVLFMQNLLQRGIGVHHSGILPILKEIVEMCFQ
QELVKLLFATETFAMGVNMPARTVIFDSCTKYDGVAVRMLMPAEYIQMAGRAGRRGLDST
GTVIVLCKTDVPDCRDVKEMMLGIPMILKSQFRLTYAMILNLLRVQDVTVENMMCHSFRE
FGHMRKADALKKQLKETEIQISSMEELSEHLYGLNEFYTTASEFLYCQDRVVPVLLNQKG
NAKYFTLGRLLIVSQGWYTPRLGMVLQIRKDLKITVLVLTDKTTKAKPYIPSSVSECSSK
AQSEEALDLWQKLLGLTEQNKFFVPQTDLSNTVLQIDARNIIAITNRVIRLDPAIILKDW
NQRQIDRFAHCPPSNTFNNAVQELLKHTNELKDLHETQYCENLRQAMDITKNIGILRDLE
LYDSVKRALAEIRKCTVIANFEKQFGQVFDRMLLEDRKSKISFSLSNESMSLYPDYKHKL
QVLHDMRYIDSHNKVLLKGRVACEMGNNELIITEIIFRNILKDLPPAEIAALLSCLVFQA
KCEKIEIPKIFQKCIGEINDIETEIMQIERQFDVAQDNTTVNKLNFGLINVVYEWAQKKP
FXDIMRLTDVQEGIIVRCIQQLNETIRDAKSAARIIGDPVLGQKMDEASEAIQRDIVFAA
SLYTQDDYSGVKILDEDDSAYDVEKI
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggatgataatgataccgaacgtctacgcgattttattctaaaccccgatata
gacatcctaaaactagacaccgaaccgattaaattcaatttggaagacatttctttatct
ttcgactgtgttccttgtttcgagaacacaacgatagtcgctgagcgcgatttggacact
ggtgacattatcgggtttaaagaagttgataacttgacactagcttacgatggaaggacc
tccatgtctttacaacgagcgcctgcgccccccgaagaatccacaatgggtagtgttatg
aactacccgttttggcctggaggttttgatcctccggaagaagtattgttgaatgatgat
gttgtacttgatttcgaagataatttgttggtatgtgcacccgggttgccacacggtata
gagtttcctaaacacgaaccaagtcaccaagagaggattgaggatttaggtttagagtct
gtaacgggtaatattacggttgacttgttagccttgacgcttgatgaggataaatttaaa
gacatttggaaaagcgatgaaacgcctgaaacaacccaagaacctgcaccagcaaccgat
tctgttgacatagattcttttatcccgaatatcaaccaagatttgcctgtacttaatata
tcaacgtctgctgatatttgtgtgaagtctaaatctttactctgggctgaggagattgat
atatcgcaaccggttactgattttgaaaaggttataccagagcctgcacatacctatcca
tttgttttggacacgttccagaaacaagcaataattaaactggaagagcacaatcatgtg
tttgtagcggctcatacatcagcaggtaaaactgtagttgctgaatatgctatagctttg
tctcgtaaacacatgacaaggnctatttatacttcacccataaaagctttgtctaaccaa
aagtacagagactttacaaatacttttagtgatgtcggtttgataacaggtgatatacaa
attaattcaacagcctcgtgtttgattatgactacagaaattttaaagtcaatgctgtac
ggtggtagtgacatcacccgtgacttggagtatgtcatttttgatgaagtgcattacatt
aatgattctgatagagggcacgtttgggaagaggttttgattttactaccccaacatgtt
tgtattgttatgctgagtgcaacagtaccgaatactttagagtttgccaactgggttggc
atgactaaacgaagcaaagtttatgttataagtactgccaagcgtccagtacctttgcaa
cattatttatacacaggctttggtggtaaaagtagggacgacaggttcctggttgtggat
gctgatggtaattggttggataataattacaagtctgcacagttgtcgaagcgttcacgc
cagacagattttcgtaaagagtttggacacggtaaacttaatcccaagcaggaacaaaca
atgtgggttggtttaatagatcatttgaaacgcaacaacgagttgcctgttatagcgttt
actttgtccagaaaacgttgtgatttaaatgcacaatctttgaactccatagattttaca
agccagcgtgagaagaaccagatacaccggtttttctccaggtgtctcaaacgtttaaac
gcacccgacagaaatttaccacaagtactgtttatgcagaacttgttacaacgtggtatt
ggtgtgcaccacagtggtatcttacctattttgaaagaaattgttgaaatgtgtttccaa
caagagttggtcaaacttctgtttgctacagaaacttttgctatgggtgtaaacatgcca
gcacgtactgttattttcgattcctgcaccaaatacgatggagttgctgtgagaatgtta
atgcctgcagagtatatacagatggccggcagagccggccgaagaggcttagacagcacc
ggcaccgtcatagtcttgtgcaaaactgatgtacctgattgccgagacgttaaagaaatg
atgctgggtatacccatgatcctgaagtcacaattcagactcacatatgctatgattctc
aacttgttgcgcgtccaggatgtcacggttgaaaacatgatgtgtcatagttttcgcgag
tttggacacatgcgtaaagctgatgctttgaaaaaacaactcaaggaaactgagatacag
atatcgtcgatggaagaactgagcgagcatttgtatgggttgaatgaattttacacgact
gcgtcggagtttctgtattgccaagacagagttgtgcctgtactgttgaaccagaaaggt
aatgctaagtattttaccctaggacgtttacttattgtgtcccaaggctggtacacacca
agacttggtatggttttacaaatacgcaaagacttaaagatcacggttttggttttaaca
gacaaaaccaccaaagctaaaccttatatacctagttctgttagcgaatgttcctccaag
gcgcaaagcgaagaagctttggatttgtggcaaaaacttttaggcctaaccgaacaaaac
aagttctttgtaccccaaaccgatctatccaacacggtcttacaaatcgatgccaggaac
atcattgctataacaaatcgagtcatcagactagatcctgccattattttaaaagactgg
aaccaacgccagatcgacaggtttgcccactgtccaccgagtaacactttcaacaacgcc
gtacaagaattgttaaaacacaccaacgaactaaaagacttacatgaaacccagtattgc
gaaaatctacgccaggctatggatatcaccaagaacatcggtattttaagggatttggag
ttgtacgatagtgtgaagagggctttggcggagatcagaaagtgtacggttattgctaat
ttcgagaagcaatttggacaagtctttgacaggatgctgttggaggacaggaagagcaag
atatcgttcagtctgtcgaatgagagcatgtctttgtatccggactataagcataagttg
caagttttgcacgatatgagatacatcgattcgcataataaagtcctcctcaaaggtaga
gtagcctgcgaaatgggcaacaacgaactcataataaccgagatcatcttccgaaacatc
ctaaaagacctaccacctgccgaaatcgcggctctgctcagctgcctagttttccaggcc
aaatgcgaaaagatcgaaatccccaaaattttccaaaaatgcatcggcgagataaatgac
attgaaaccgaaattatgcaaatcgaaagacaattcgatgtggcccaggataacacgaca
gtcaacaagctaaacttcggtctcatcaatgtggtttacgaatgggcgcagaagaagccc
tttncggatataatgagactgactgacgtccaggaagggattattgtaaggtgtatacaa
cagttgaatgagactattagggatgctaaaagtgctgctaggattataggggatcctgtt
ttagggcagaagatggacgaggcttctgaggccatccagagggacatcgtctttgcggcg
agtttgtacacccaggatgattattctggtgttaagattctggacgaagatgattcggcg
tatgatgttgaaaaaatttaa
DBGET
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