Ctenocephalides felis (cat flea): 113366942
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Entry
113366942 CDS
T08578
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cfel
Ctenocephalides felis (cat flea)
Pathway
cfel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113366942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfel03041
]
113366942
Enzymes [BR:
cfel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113366942
Spliceosome [BR:
cfel03041
]
Complex C
Other components
Step II factors
113366942
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
AAA_30
T2SSE
Sigma54_activ_2
Microtub_bd
ABC_tran
AAA_16
AAA_14
PhoH
ATPase
AAA_33
AAA_7
SRP54
cobW
AAA_23
Sigma54_activat
AAA_29
Motif
Other DBs
NCBI-GeneID:
113366942
NCBI-ProteinID:
XP_026464368
LinkDB
All DBs
Position
Unknown
AA seq
647 aa
AA seq
DB search
MEDKDIHRLEASENIQGGLVITKKKPDTFKVPQVSKLGLDKLAASKRLEKELRSRLSFDE
RDKDDEEATGSNSSKDSKEQSKLSKNFRQPHIETPTHTGGLSDKAREKLEHHKYNDRSHK
GVYASTKDKDKNRDRDSSKDRDRDRYSSRHRDYDRRSYDRKRDDRSTRKRDRDYSSRSEG
TPRFRDEPRTPNIYPEKDRPGKSSWEDDDEKVPLKRSSWDLPTPKVHIEQTNLDSVRSSK
RRNYNETPRPTPAHRYNTWAAERKRSGATPMVDNSPEKPWKTEEDKDLWEEEQRRLDREW
YNIDEGFDEERNPFGSSDYTNRKEQQMEKKRRMTARQRQINRDNELWERNRMLTSGVVMT
TNVNEDFDEETIDRVHLLVHHIVPPFLDGRMVFTRQPDPVVPVRDPGSDMALTARKGSAL
VRVYREQKERRKAQKKHWELGGTTIGNIMGIKKEEEEADSKLDAETDTADYRSDQKFAEH
MKDQKDTGKSHFSKSKTIIQQRRYLPVFAVRQELLNIIRENNVVIIVGETGSGKTTQLTQ
YLHEEGYSRLGMIGCTQPRRVAAMSVAKRVSDEMGTQLGDEVGYAIRFEDCTSEKTIIKY
MTDGILLRESLRESDLDNYSAIIMDEAHERSLSTDVLFGLLRDVKIM
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggaagataaagatatccatcgattagaagcctcagaaaatattcaaggtggtttagtg
ataacgaaaaagaagcctgatacatttaaagtgccccaagtttcaaaattaggtttagat
aaactcgctgctagcaagaggctagaaaaagaattacgatctcgattatcatttgatgag
cgagataaagatgacgaagaagccaccggctctaattcttcaaaagacagtaaagaacag
tctaagttatccaaaaattttagacaacctcatatagaaactccaacgcacacagggggt
ctatcagacaaggccagagaaaagttagaacaccataaatataatgatagaagccacaaa
ggagtgtatgcttcaaccaaggataaagataaaaatcgagatagagacagtagtaaggac
cgagatagagacagatacagttcacgccatagagattatgatagacgtagttatgataga
aaacgagatgatagatcaacaaggaaacgtgatagagactattccagtcgaagtgaaggc
acacctagattcagagatgaaccaagaacaccaaatatctaccccgaaaaggacagacct
ggtaaaagttcttgggaagatgatgatgaaaaggtaccactaaaaaggtcatcttgggat
ttacctacacctaaagtgcatattgaacaaacaaatttggatagtgtaagaagtagtaaa
agaagaaactataatgagacacctaggcccacaccagcacacaggtataatacatgggct
gcagagcgtaaacgttcaggtgccacacctatggttgataattctccagaaaaaccttgg
aaaactgaagaagataaagatttatgggaagaagaacagcgtagactcgatcgtgaatgg
tataacattgatgaagggtttgatgaagaaaggaatccatttggaagttctgattataca
aatcgtaaagagcaacaaatggagaagaagagaagaatgactgccagacaaagacaaatt
aatcgagataatgagttgtgggaacgtaatcgtatgttaacatctggtgttgttatgacc
accaatgtaaatgaagactttgatgaggaaaccatagatagagttcatttattagtgcat
catatagtgcctccatttttggatggaagaatggtttttacaaggcagccagatccagtt
gtgcctgttagagatcctgggtcagacatggcactcacagctcgcaagggcagtgcttta
gtaagggtatatcgagaacaaaaagagcgaagaaaagcccagaaaaaacattgggaactc
ggtggaaccacaataggtaatattatgggtatcaaaaaggaagaagaagaagctgattca
aaattagatgctgaaaccgatactgccgattatcggagtgatcagaaatttgctgaacac
atgaaagatcaaaaagatactggaaaaagtcatttttctaaatctaaaactattattcaa
cagagaagatatttgccagtttttgctgtcagacaagaattattgaatataattagggag
aataatgttgtgattattgttggtgaaactggtagtggaaaaacaactcaattaactcag
tatttacatgaagagggttacagtagattaggcatgataggttgtacacaacctagacgt
gttgctgctatgtctgttgccaaacgtgtctctgatgaaatgggaactcaactaggtgat
gaagtaggttacgcaattcgatttgaagattgcacatcagagaaaacaataataaaatac
atgactgacggtattttattgagggagagtttaagagaaagtgatcttgataattattct
gcaattattatggatgaagctcatgaaagatctttgtctacagatgtgctgtttggacta
ctaagagatgttaaaattatgtag
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