Ctenocephalides felis (cat flea): 113368477
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Entry
113368477 CDS
T08578
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cfel
Ctenocephalides felis (cat flea)
Pathway
cfel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113368477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfel03019
]
113368477
03041 Spliceosome [BR:
cfel03041
]
113368477
03009 Ribosome biogenesis [BR:
cfel03009
]
113368477
03016 Transfer RNA biogenesis [BR:
cfel03016
]
113368477
Enzymes [BR:
cfel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113368477
Messenger RNA biogenesis [BR:
cfel03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113368477
Spliceosome [BR:
cfel03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113368477
Complex C
U4/U6.U5 tri-SnRNP related factors
113368477
Ribosome biogenesis [BR:
cfel03009
]
Eukaryotic type
Pre-60S particles
Helicases
113368477
Transfer RNA biogenesis [BR:
cfel03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113368477
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
AAA_22
ATPase_2
nSTAND3
Anthrax-tox_M
Motif
Other DBs
NCBI-GeneID:
113368477
NCBI-ProteinID:
XP_026465811
LinkDB
All DBs
Position
Unknown
AA seq
1038 aa
AA seq
DB search
MDDLDELFSCFTSNNQNSIGPPTVPPPKDVSEKPKDDDAKGTKRPVSPGPSEKLEESPKK
LKMDPLLDDINLDDLNKRIVVHTIETVEGCLHEVAYPPGLDYIPLRPPSSVPAKEYPFLL
DPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYSIAKSLKDKQRVIYTTPIKALSNQKFR
EFTEEFKDVGLITGDVTINPTAACLIMTTEILRSMLYRGSEVTREVGWVIFDEIHYMRDK
ERGVVWEETLILLQDNVRQVFLSATIPNATQFAEWVCFIHRQPCHVVYTDYRPTPLQHYI
FPAGGDGIHLVVDEKGLFKEDNFNKAMAVLANAGDAAKGDQRGRRGGIRGANPTESNIYK
IVKMVMERNFAPLICFSFSKKECETYAMQMAKLDFNSTEEKKFVDEIFHNAIDVLNEEDK
KLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFAEGLIKALFATETFAMGLNMPARTV
LFTSPRKFDGKSMRWISSGEYIQMSGRAGRRGLDDKGIVILMLDEKVSPATGKEIVQGKA
DPINSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQNLSSIPDLYQKVMDKSQELQTCT
VDREFEISSYHHIRTKLDDLGEEYRNFITKPEYLVPFLQPGRLVKVKNTLHEYDWGMVVN
YKKQRVTQRPIRGRRNPNPMSDEEHHVIVDILLHIAKIDDAANSSQVSKIPPPCLEGETG
DIEVISVEHGAIWKISSVRVHCPNDLRPIDSRKSMFKTIQEVKKRFPEGPPLLKPIEEMH
IKDEEFLNCKNLIEQFEERLYKHPLHKDANLDKLYNDYTNKLQVTADFKSAKQALKKAMS
LLHMEELKCRKRVLRRLGYCTPSDVIEIKGRVACELSSADELLMTEMMFEGIFNGIKVEE
CLALLSCFVCDEKSQETQKATETLSGPLRHMHNLARKIAKVSKESKIEIDEEAYIQQFKP
HMMDVVIAWCRGSKFAEICKMTDIFEGSIIRCMRRLEELLRQMIQAAKSIGNTDLEIKFS
EGIQLLKRDIVFAASLYL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggacgatttggacgaactttttagttgtttcactagtaataatcaaaattcaataggt
cctcctactgttccacctccaaaggatgtttcagaaaagcctaaagatgatgatgctaaa
ggcacaaaaagaccagtttctcctggaccttctgagaaattggaagaatcaccgaagaag
ttgaaaatggatcctttgttggatgatatcaatttagacgacctaaacaagcgcatagta
gtacacacaatagaaacagtggaaggatgtttacacgaagtagcatacccccctggattg
gattacattcctttaagacctcccagttctgtaccagctaaagaatatcctttcctatta
gatccttttcaaaaggaagctattttgtgcatagaaaacaaccagagcgtattagtatct
gcacatacgtctgcaggaaaaactgttgtagctgagtattccatagctaagtcgttgaag
gataagcagagagttatatatacaacaccgattaaagctttatctaatcaaaagtttcga
gagtttacagaagaatttaaggatgtcggtttgattactggagatgttactatcaatcca
acagctgcctgtttaattatgaccactgagattttgcgcagtatgttatacagaggctca
gaggttactcgtgaggtcggttgggttatttttgatgaaatccattacatgagagacaaa
gaacgtggagtcgtatgggaagaaactttaattctccttcaagacaatgtgcgacaagtt
tttctatcagccacaattcccaatgcaacacaatttgctgaatgggtctgttttatccat
cgacaaccttgtcatgttgtttatacagattacaggcctactccgttgcaacattatatt
tttcctgcaggaggggatggaatacatttagtagtggacgaaaagggtcttttcaaagaa
gacaatttcaacaaagcaatggctgtgttagcaaatgcaggagatgcagcaaagggcgac
caaagaggccgaagaggtggtattcgaggcgcaaatcctactgaaagtaatatttataaa
attgttaagatggttatggaaaggaactttgcaccattgatttgcttcagcttttccaag
aaagaatgcgagacttatgccatgcagatggccaaacttgattttaattccactgaggag
aaaaagtttgtcgacgaaatttttcacaatgctattgatgttttgaatgaagaagacaaa
aaactaccacaggtggaaaatgtgttacccttactaaaaagaggcattggtattcatcac
ggtggtttattaccaatattgaaagaaactattgaaatattgtttgctgaaggtttaatc
aaagccttatttgcaactgaaacttttgctatgggtttgaacatgcctgcgaggactgta
ttatttacgtcgcctagaaaatttgatggaaagagtatgagatggatttcctccggagag
tacattcaaatgtctggcagagccggtcgacgtggcctggacgacaaaggaatcgtaatt
ttgatgctggacgaaaaagtttcgccggcaacaggaaaggaaatcgttcagggcaaagct
gatcctataaattcagcttttcatctgacttacaacatggttttgaatttattgagagtc
gaagaaatcaatcctgaatatatgttggagaagagtttttatcaatttcagaacttgtct
tcgataccggatttatatcaaaaggtcatggacaaaagtcaagaactacaaacttgcaca
gtcgaccgagaattcgaaatatcgtcctatcatcatatcagaacgaaattagatgactta
ggtgaagaatatagaaattttataaccaaaccggaatatctggtaccgtttttgcaacct
gggaggctagttaaggttaaaaacactttacatgaatacgattggggcatggtggtgaat
tataagaagcaaagagttacccagagacccataagaggcagaaggaacccaaatccgatg
agcgatgaggagcatcatgtgattgtcgatattttgttgcatattgccaaaattgatgat
gcagcaaatagtagtcaggtatcaaagatacctccgccttgcttggaaggagaaactgga
gatattgaggtgatatcagtggaacatggtgccatatggaagattagttctgtccgagtt
cattgtccaaatgatttgagacccattgatagcagaaaatcgatgtttaaaacgatacaa
gaggttaagaaaagatttccagaggggcctcctttgttgaaaccgattgaggaaatgcat
atcaaggatgaggaatttttgaattgtaagaatttaatagaacaatttgaagaaagactt
tacaaacatcccttacacaaagatgctaatcttgataagttgtataatgattacacaaat
aaactacaagtgactgcggattttaaaagtgcaaaacaggcattgaaaaaggcaatgtcc
cttctccacatggaagagctaaagtgcagaaagcgtgtactgagacgtctcggttactgc
accccatcggatgtcatagagataaagggtcgcgttgcctgcgaattgagcagcgccgac
gaattgcttatgacggaaatgatgtttgaaggtatttttaatggtatcaaagtcgaggag
tgtctcgctcttttgagctgctttgtctgtgacgagaagagtcaggagacgcagaaggct
actgagacgctatcgggacctctgaggcatatgcataacctggcaagaaaaatagcaaaa
gtcagcaaagaatccaaaatagaaatcgacgaagaggcttacatccagcaattcaaaccg
cacatgatggatgttgtcattgcctggtgtcggggatcgaaatttgcagaaatttgcaaa
atgactgatatattcgaaggatctatcattcgatgtatgagacgactggaggagcttttg
aggcagatgattcaggctgccaaaagtataggaaatactgacttggagatcaagtttagc
gaagggattcaattgctgaagagggatattgtttttgctgctagcttgtacttataa
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integrated database retrieval system
