Ctenocephalides felis (cat flea): 113376987
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Entry
113376987 CDS
T08578
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cfel
Ctenocephalides felis (cat flea)
Pathway
cfel03020
RNA polymerase
cfel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113376987
09124 Replication and repair
03420 Nucleotide excision repair
113376987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfel03021
]
113376987
03400 DNA repair and recombination proteins [BR:
cfel03400
]
113376987
Enzymes [BR:
cfel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113376987
Transcription machinery [BR:
cfel03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113376987
DNA repair and recombination proteins [BR:
cfel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113376987
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
bPH_3
DUF3137
Motif
Other DBs
NCBI-GeneID:
113376987
NCBI-ProteinID:
XP_026472923
LinkDB
All DBs
Position
Unknown
AA seq
1894 aa
AA seq
DB search
MAASDSKAPLRTVKKVQFGILAPDEIRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTLKILRCVCFYCSKMLVSPQNPK
IKEVVSKSKGQPRKRLAYVYDLCKGKKICEGGEDMDLTKEGAPADPNKKAGHGGCGHYQP
SLRRTGLDITAEWKHVNDESQEKKIFVSAERVWEILKHITDEECFVLGMDPKFARPDWMI
ITVMPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELMRNEASGAAAHVITENIKM
LQFHVATFVDNDMPGMPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNMTFPELVTPFNIERMQELVRRGNSQYPGAKYIVRDNGERIDL
RFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFIEKEQMMNILMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTH
PDEEDDGPYKWISPGDTKVMVEHGQLIMGILCKRTLGASAGSLLHIVFLELGHETAGRFY
GNIQTVVNNWLLLEGHSIGIGDTIADPQTYMEIQRAIKKAKEDVIEVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRXIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVEFQNLPTI
KLSNKVFEKKFKFELSNERYLRKIFNEDVVKELTESGYVISELESEWEQLNRDREALRSI
FSNGESKVVLPCNLQRMIWNVQKIFHINKRMPTDLSPIKVIQGVKDLLTKCVIVAGNDRL
SKQANENATLLFQCLIRSTLCTKYVSEEFRLSTDAFNLLIGEIETRFQQAQCNPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNIYYEMPDFDPTKISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKF
QDEEENVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITETGEFK
AIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDADKCKDGIDIANTLGGVVGDIGFFGIATTPSAS
PRMTPWSQGATPAHGASAWSPNQYSMMTPGGPSFSPSGASDASGLSPGWQPGSPSSPGPS
MSPYFASPSASPPYSPNSPAYAPTSPNMTPTSPMYSPASPSYSPTSPNYSPTSPNYSPTS
PNYSHTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPNYSPASASYSPTSPSYS
PTSPSYSPTSPSYPSASPSYSPTSPTYSPTSPAAYSPTSPNYSSSSPNYTPASPNYSPTN
PSYSPSSPRYSPGSHSYSPSSPKYSPTTPNYSPTSPSFVSGSPQYTPTTPSYSPTSPSYS
PTSSNYSPSSPQHTPGSSTRYSPSSPNYSPTSPSYSPGSLQYSPNSKYSPTSPTYTRTSP
TYSPSSPSFTNTPGYSPTSPSYSPASPSYDESSD
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgagcgattccaaggctcccttgcgaactgttaaaaaggttcagtttgggata
ttagccccagacgaaattagaaggatgtctgttaccgagggtggtattcggttttccgag
actatggaaggtggtagacctaaactgggcggtttgatggatccaagacagggggttatc
gacagaaattcacgatgccaaacttgcgctggcaacatgacagaatgcccaggacatttt
gggcatatagatcttgctaaacctgtgtttcatattgggtttgtaacaaagacactgaaa
attctgcgatgtgtttgtttttattgctcaaagatgttagtgagtcctcaaaatccaaaa
attaaagaagtagtttcaaagtctaagggacagcctcgtaaaagactagcttatgtgtat
gatttatgtaaaggcaaaaaaatatgcgaaggtggtgaagacatggatttgactaaagaa
ggtgctccagcagatccaaataaaaaggctggacatggtggttgcggtcattatcaaccc
tcattaagaaggacaggattggatattacagcagagtggaaacatgtaaatgatgaatca
caagaaaagaaaatatttgtcagtgcagaaagagtgtgggagatcttaaaacatataaca
gatgaagaatgttttgttctgggtatggatccaaaatttgcaagaccagattggatgata
attactgttatgcctgtaccacctttagctgttaggccagctgttgtcatgtttggtgct
gctaagaatcaagatgatttgacacacaaattgtctgatatcattaaagctaataatgaa
ttaatgagaaatgaggcatctggagctgcggctcatgttattactgagaatattaaaatg
ttacaatttcatgttgcaacttttgttgataatgacatgcctggaatgcctagagcaatg
cagaagtctggaaagccattgaaagctgtcaaagcaagattaaaaggcaaagaaggtcgt
attagaggaaatcttatgggaaagcgtgtagacttttcagcacgtactgtcattacacca
gatcccaatttaagaatagatcaagtaggagttcctagatctattgcacaaaatatgact
tttccagaattagtaacaccctttaacatagaaagaatgcaagaacttgtacgtagaggt
aattcacaatatcctggtgcaaaatatatagttcgtgacaatggggaacgtattgactta
cgctttcatcccaaaccttctgatttgcatcttcaatgcggatacaaagttgaaaggcat
ttaagagatgatgatttagtgattttcaatcggcagcccactttgcacaaaatgagtatg
atgggtcacagggtaaaagtcctgccatggtctacattccgtatgaatttaagttgtaca
tctccatacaatgctgattttgatggtgatgaaatgaacttgcatgttccgcaatccatg
gaaacacgagctgaagtagaaaatattcatattacacctcgacaaattattacaccacaa
gcaaataagcctgttatgggtattgtacaggatactttaactgcagttagaaaaatgaca
aaacgtgatgtattcatcgaaaaggagcagatgatgaacatacttatgttcttacccact
tgggatggtaaaatgccacaaccttgcatattaaaaccaaaaccattatggactggtaaa
caaatctttacacttatcattcctggtaatgtaaacatgatccgcacacattcaacccat
cctgatgaagaagatgatggaccatataaatggatttctcctggtgatacaaaagtaatg
gtagaacatggacaattgattatgggaatcttgtgtaaaagaaccttgggtgcttcggca
ggttccttgctccatattgtttttctggagttgggacatgagacagcaggtagattttat
ggaaacattcaaacggtggtaaacaattggcttttgttagaaggtcatagtattggtatt
ggtgatactattgctgatcctcaaacctatatggagatccagcgtgctattaaaaaagcc
aaagaagatgtcatagaagttatccagaaagctcacaacatggagctagaacctactcca
ggtaataccctgaggcagacttttgagaatcaagtaaacagaattctaaatgatgctcgt
gataaaactggaggatctgcaaagaaatctcttaccgaatataataatctaaaagctatg
gtggtgtcaggttccaaaggttccaatattaacatttctcaagttattgcttgtgtaggt
caacagaatgtagaaggtaagcgtattccatttggatttcgtaagcggaccttgcctcat
ttcattaaggatgattacggtcctgaatctagaggtttcgtagaaaactcatatcttgct
ggcttgacaccttcagaattttatttccatgctatgggtggaagagaaggtcttattgat
actgctgtaaaaactgcagaaacaggatacatccaacgtcgtntgataaaggctatggag
tctgttatggtacattatgatggaacagttcgtaactcagttggacaacttattcagtta
aggtatggcgaggatggtttgtgtggtgaagcagtggagttccaaaaccttcccaccatc
aagttatccaataaagtatttgagaagaagttcaagtttgaattatcaaatgaaagatat
ctccggaagatatttaatgaagatgttgtaaaggaactaacagaatcaggctatgttatt
tccgagctggaaagtgaatgggagcagttaaatagggatcgtgaagctttaagatctatt
tttagcaatggagaatctaaggtagtactgccttgtaatctacagcgtatgatttggaat
gtgcaaaaaatcttccatataaataaacgaatgcctactgacttgagtccaattaaagtt
attcaaggagtaaaagatttacttacaaagtgtgttattgtagctggtaacgacaggttg
tcgaaacaggctaatgaaaacgccactctactatttcagtgtcttatacgttctacattg
tgcactaaatatgtatcagaagaatttaggttatcaactgatgcttttaatcttctaatt
ggagaaatagaaacacgttttcagcaagctcaatgtaatcctggagaaatggttggtgcc
ttagctgctcagtctttaggagaaccagctactcaaatgacactgaatactttccatttt
gctggtgtatcatcaaagaacgtaactttgggtgtacctagattgaaggaaattatcaat
atttccaaaaaacctaaagctccttcactgactgtatttttaactgggggtgcagccagg
gatgcggaaaaggctaaaaatgtactttgcagattggagcatactacgttaagaaaagta
actgcaaatacagctatctattatgatcccgatccacaaaacactgtgatatcagaggat
caagagtttgttaatatctattatgaaatgcctgattttgatccaacaaagatttcacca
tggttgttacgtattgaattagataggaaacgtatgacagataaaaaactgaccatggaa
cagattgctgaaaaaattaatgcaggctttggagatgacttgaactgtatatttaatgat
gacaatgctgaaaaactagtactgcgaattcgaattatgaatagtgatgataataaattc
caagatgaagaggaaaatgttgataaaatggaagatgatatgtttttgagatgtattgaa
gccaatatgttatctgacatgacattacagggcattgaggctattggaaaggtatatatg
catttacctcagacggatagtaaaaaacgaattataattactgagactggtgaattcaaa
gcaattgctgaatggctattggaaacagatggaacgtcaatgatgaaagttttaagtgag
agagatgttgatccagtcaggaccttcagtaatgatatttgtgaaattttctcggtgctg
ggaatagaagctgtgagaaagtctgtagagaaggaaatgaatactgtattgcaattttat
ggtctttatgtaaactatcgacatttagctttactttgtgatgttatgactgccaaaggt
cacttgatggctatcactcgtcatggtattaacagacaagacactggagctttaatgaga
tgttcctttgaagaaactgttgatgtattgatggatgcagcttcacatgctgaagtagat
ccaatgagaggagtgtctgagaacattattatgggacaactgcccaggatgggaacagga
tgctttgatttattattggatgctgataagtgtaaagatggtattgacattgcaaatact
cttggcggcgttgttggtgacattggcttctttggtattgctaccactcctagtgcaagt
cctagaatgacaccatggagtcagggagctacgccagcccatggagctagtgcttggtca
ccaaatcaatattccatgatgacaccaggtgggccatcattttcgccatctggagcttca
gatgcttctggtctttctcctggctggcaacctggatcacctagttctccaggaccttca
atgtctccatactttgcatcaccatcggcatctccaccttattcaccaaacagtccagca
tatgcacccacctcgccgaatatgacacctacttctccaatgtattcaccagccagtcca
tcgtactctccaacttcaccaaactattcacccacaagtccaaattattctcctacaagt
ccaaattattcacatactagccccagctattcaccaactagtccatcttacagtcccact
tccccttcatacagtcctactagtcctagttactcccctacatctccagtatattcacca
acaagtcctaactattctccagcaagtgcaagttattcacccacaagccctagctattcg
ccaacaagtcccagttattcacctacaagtcccagttatccatcagcatctccatcatac
tctccaacttctcccacatattccccaacatctccggctgcatattctccaacaagcccc
aattattcctcatcctcaccaaattatacaccagcatcacctaactattcaccgacaaat
cccagttattccccaagttctcctaggtattcgccaggcagccatagttattcaccaagt
tcaccaaaatattctcccaccactcctaattattctccaacgtctccatcatttgttagt
ggaagtccgcaatatacaccaacaactccctcttattcacctaccagtcccagttactca
cctactagttcaaattattcccctagttctccacaacatactccaggttctagcacaagg
tattcgcctagttcaccaaattattcgccaactagtcctagttattcacctggatctcta
cagtactcgcctaatagcaagtattcaccaacaagcccaacatatacccgtaccagtcct
acgtactctccatcttcgccgtcatttacaaatacacccggttacagtccaacaagtcct
tcttatagtccagcaagccctagttatgatgaatcatcagactaa
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integrated database retrieval system
