Ctenocephalides felis (cat flea): 113385033
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Entry
113385033 CDS
T08578
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cfel
Ctenocephalides felis (cat flea)
Pathway
cfel03008
Ribosome biogenesis in eukaryotes
cfel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfel00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
113385033
09123 Folding, sorting and degradation
03018 RNA degradation
113385033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfel03021
]
113385033
03019 Messenger RNA biogenesis [BR:
cfel03019
]
113385033
03009 Ribosome biogenesis [BR:
cfel03009
]
113385033
03016 Transfer RNA biogenesis [BR:
cfel03016
]
113385033
Transcription machinery [BR:
cfel03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113385033
Messenger RNA biogenesis [BR:
cfel03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
113385033
Ribosome biogenesis [BR:
cfel03009
]
Eukaryotic type
Pre-60S particles
RNases
113385033
Transfer RNA biogenesis [BR:
cfel03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
113385033
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
113385033
NCBI-ProteinID:
XP_026478620
LinkDB
All DBs
Position
Unknown
AA seq
930 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVECVEEKHVDDQGKITPANSSLPNPNGVEFDNLYLDMNGIIH
PCTHPENKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETTEKMMEMKRIKDELRSRGAALPPEKPKEEHFDSNCITPGTPFMDRLSKCLHYYIH
SRFQSDPGWKGIKVILSDANSPGEGEHKIMDFIRKQRAQPDHDPNTSHVLCGADADLIML
GLATHEPNFTIIREEFKPNQARPCDICGQIGHEMKDCTGLEVQDISSDQPKFSAEPQFIF
VRLNILREYLQKELEMPNLPFKYDFERAIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRL
VNLYKKCVYKTGGFITDSGDVNLSRVQMILHDLGLAEDEIFKKRQQTELNFKARDKARKQ
RERNQFNHNRPNFNLLNNTPMQPMAVGKDSGHTVHNARKVAYDMRVAGMLSQNKSSTTNA
PLESMIHLDGKQPQQSKDKEDDDESEPNDEVRLWEDGFKDRYYESKFDVGPDDLEFRNNV
ALQYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFINIDGLSTEFETGTKPFKPLEQL
MSVFPAASSIHVPEPWAILMSDPYSPIIDFYPVDFKIDLNGKKFAWQGVALLPFVDEERL
FEALKPYYSKLSQAEIKRNVRGDDRLYINKDNSDYGFIRGLYHNKLDSDSEYNIVMQGMS
GKVLLAEDCVSEGGILPSPVQGLKPLTDNTLYVVRYRDPTYEEGYIFPARRLEGAIDPPR
VLKPSDLSAAESRNWRPQIGMAPSQTRAYLGQAGHRMINHHAPRDQPNYSNPHAGGNRGY
INNHSGNNYNQSGRGHYNSYAGSSSGSHHQNYGNQYNSGYTNPRNYGYNQDRGNNYQNNR
RPNKRPSDSDRDYKQNDGTRYPYNKMRRTQ
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccagcattctttcgttggctaagccgaaaatatcctagcgttatagtagaa
tgtgttgaagaaaagcatgttgatgaccagggcaaaattacacccgcaaatagttcgttg
ccaaatccaaacggtgttgaatttgacaatttataccttgacatgaatgggattattcat
ccttgtacacatcctgaaaataaaccagcaccaaaaaatgaagatgaaatgatggttgct
atttttgaatgcattgataggttatttggcatagtgagacctagaaaattattatacatg
gcgattgatggtgtagcacctagggctaaaatgaatcaacaacgatcccgtcgttttcga
gcttccaaagaaacaacagagaagatgatggaaatgaagcgtattaaagatgaattgaga
agtaggggagcagccttaccaccagagaaacctaaagaagaacattttgattcaaattgt
atcacacctggcactccattcatggatcgtctgagcaaatgcctgcattactatattcat
tcaagatttcaaagtgatccagggtggaaaggtattaaagtcatcttgtcagatgccaat
tctccaggggagggagagcataaaataatggattttattcgaaaacaaagagctcaacct
gatcatgatcctaataccagtcatgttctttgtggtgcagatgccgacttaataatgttg
ggacttgcaacacatgaaccaaacttcaccataatcagagaggaatttaaaccaaatcaa
gctcgcccatgtgatatatgtggtcaaataggtcatgagatgaaagattgcactggccta
gaagtacaagacatatcttctgatcaaccaaaattttctgcagaaccacagttcatattt
gttagattgaatattttaagagaatatttacagaaagaattggaaatgccaaacttacct
tttaaatatgattttgaaagagctattgatgactgggtctttatgtgcttttttgttggc
aatgattttctaccacatttgcctagtttagaaattagagaaaatgctatagataggtta
gtaaatctctataaaaaatgtgtttataaaactggaggttttataacagattcaggagat
gtcaacttaagtagggttcaaatgattctacatgatttaggattggctgaagatgaaatc
ttcaagaaaagacaacaaactgagctgaatttcaaggctcgcgacaaagcccgtaagcaa
cgtgaaagaaatcaatttaatcataatagaccgaattttaacttgttaaataatactcct
atgcagccaatggctgtaggtaaggattctggtcatacagttcataatgctcggaaagtg
gcttatgatatgagagtggctggaatgctttctcaaaataaatcttctacaacaaatgcg
cctcttgaaagtatgatacatctggatggcaagcaacctcagcaaagtaaagataaggaa
gatgatgatgaatcagaaccgaatgatgaagtcagattgtgggaggatggatttaaggac
agatattatgaatcaaagtttgatgtgggtcctgatgatttagagtttcgaaacaatgtt
gcacttcagtatgtacgaggattatgttgggtactgaggtattattaccaaggttgtgct
tcttggaaatggtattttccttatcactatgcgccttttgcatctgatttcattaacata
gatggtctgtcaactgaattcgaaactggcacaaaaccttttaagccattagaacagcta
atgagtgtgtttccagctgcttcaagtattcatgtaccagagccatgggctattttaatg
agtgatccctattcaccgattattgatttttatccagtcgacttcaaaattgatttaaat
ggcaaaaagtttgcttggcaaggtgttgcattgctaccatttgtggacgaagagcggcta
tttgaagccctcaaaccatattattcaaagttatcacaggcagaaataaagagaaatgta
cgtggtgatgatcggttatacattaataaagacaattctgattatggttttatacgaggt
ctttatcataataagttagattctgattctgaatacaatattgtgatgcaagggatgagt
ggaaaagtgcttttggctgaagattgtgtctcagaaggtggcattttgccttcacccgtt
cagggtctaaaaccattaactgataacactctttatgttgttagatatagagatccaact
tatgaagaagggtacatctttcctgcacgaagattggaaggggcaatcgatcctcctcgc
gtgcttaaaccatctgatctctcagcagctgaaagcaggaattggaggccccaaattggt
atggcaccctcacaaacacgtgcatatctaggacaagctggtcatagaatgataaatcat
catgcacctagagatcaaccaaactattccaatcctcatgcaggtggcaatagaggttat
ataaataatcattcaggaaacaattacaaccaatctggaagggggcattataattcctat
gctggaagttcttccggaagccatcatcaaaactatggtaatcaatataattcaggttac
acaaatccaagaaattatggatataatcaggatagaggcaataattaccagaacaatcga
agaccaaacaaaagaccatcagattcagatagagattataaacaaaatgatggtactaga
tatccctacaataaaatgcgccgtacacaataa
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