Ctenocephalides felis (cat flea): 113385509
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Entry
113385509 CDS
T08578
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cfel
Ctenocephalides felis (cat flea)
Pathway
cfel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113385509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfel03041
]
113385509
Enzymes [BR:
cfel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113385509
Spliceosome [BR:
cfel03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
113385509
Complex B
113385509
Complex C
U2 SnRNP specific factors
113385509
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
PRAI
Motif
Other DBs
NCBI-GeneID:
113385509
NCBI-ProteinID:
XP_026479149
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MSQNNYRGSTFDSSGKRSTDIGKGFHAVPPPALDAFRKTNKANANMPGVNKQGYTTMNAI
SHNAITAGMGITRKRAKTEDEYFDEIEDDSTPSGSDLAYIPAPGSPSCKMSQNDDSDSEE
DPLDAFMAGIEKQVKKEKASVSTSELAVNKKKGVRDDIDEEDVEESYYRYMEENPNAGVI
DEGSDVEIEYDEDGNPIAPPKKRHIDPLPAIDHSEIDYCSFEKNFYIEHEDIQNLDKNQV
DDLRSTLGIKVSGPSPPKPVTSFGHFGFDESLMKAIRKAGYTQPTAIQAQAVPAALGGRD
VIGIAVTGSGKTAAFLWPMLVHIMDQKELAPGDGPIGLILAPTRELSMQIYNEARKFGKV
YNINVICCYGGGSKWEQSKALEEGGAEIVVGTPGRLIDMVKMKATNLTRVTYLVLDEADR
MFDMGFEPQVRSICDHVRPDRQALLFSATFKRKVEKLAREALTDPVRIVAGGEVGLANQD
VEQRVLVIPQPAHERKWAWLLNHIVEMMSAGSVLVFVTKKSDAEQVANNFKLKEFDVLLL
HGDMEQAERNKVITSFRKQEVPIMVATDVAARGLDIPHIKTVVNYDIARNIDTHTHRVGR
TGRAGEKGVAYTLMSEKDKEFAGHIVRNLEGANQEVPKEVMDLALQSSWFRKSRFKQGKG
KKLNVGGVGLGFKERPGMRTSEDTGTNNSYERAIIKPPKGPATSRLSAMKEAFKSQYTSQ
FKASTDHSWENNVQPQFVPPLAPEPLPIQDNNKRKAKKSRWE
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaataattatcgtgggtctacttttgactcgtctggtaaaagaagtactgat
atcggtaagggatttcatgctgtacctccgcctgccctggatgcttttaggaaaaccaac
aaagcaaatgcgaatatgccgggtgtaaataaacaaggctacacaacgatgaatgcaatt
tcgcataatgctattacggcaggaatgggaataacgagaaaaagggccaaaactgaagac
gaatattttgatgaaattgaagacgattctactcctagtggtagtgatttagcatatatt
cctgcacctggaagtccctcatgtaaaatgtctcaaaatgatgattctgattcagaagaa
gatccattggatgcttttatggctggaatagaaaaacaagttaaaaaggagaaagcttct
gttagtacatctgaattagcagttaataaaaagaaaggtgttagagatgatattgatgaa
gaagatgttgaagaatcatattacagatatatggaagaaaatcccaatgctggtgttatt
gatgagggttccgatgttgaaatagaatatgatgaagatggaaaccccattgctcctcct
aaaaaaaggcatattgaccctcttccagcgattgatcactcagaaatcgattattgctca
tttgaaaaaaatttctatattgaacatgaagatattcaaaatctggacaaaaatcaagtt
gatgatctcagaagtactttgggcattaaggtttctggaccgagtccaccaaagccagta
acaagttttggtcattttgggtttgatgaatccttgatgaaggcaataagaaaagctggt
tatacgcaacctactgcaattcaggctcaagctgtacctgcagctcttggagggcgagat
gtaataggtatagctgttactggcagtggaaaaacagcagcctttttatggcctatgttg
gttcatattatggaccaaaaggaacttgctccaggagatggtcctattgggctaattctt
gctcccactcgagagctatctatgcagatttataatgaagcaagaaaatttggtaaggtg
tacaatatcaatgttatttgttgctatggtggtggatctaaatgggaacaatcaaaagct
ttggaagaaggaggggctgaaattgttgttggaacaccaggcagattaatagatatggtt
aaaatgaaggctactaatcttaccagagttacatatcttgttttggatgaagctgacagg
atgtttgatatgggctttgaaccacaagttcgttcaatatgtgatcatgttaggccagac
cgacaagcattactgttcagcgcaactttcaagcgtaaagtggaaaaattagcccgagaa
gcattgaccgatccagttaggattgttgctggtggtgaagttggtctggccaaccaagat
gtggaacaaagagttctggtaattcctcaacctgcacatgaacggaaatgggcatggtta
ctaaatcacattgtagaaatgatgtctgctggaagtgttttggtgtttgttacaaaaaag
agtgacgctgagcaagtggcaaataattttaaattaaaagaatttgatgttctcttatta
catggtgatatggaacaagcagaaagaaataaggtgattacgtccttcaggaaacaagaa
gttcctataatggttgctacagatgttgctgctaggggtttggatattccacatattaag
actgttgtgaattatgatattgcacgaaatatagacacacatactcacagagttggaaga
acaggcagagctggtgaaaaaggtgtagcttataccttgatgagtgaaaaagataaggaa
tttgctggacacatagttaggaatctagaaggagcaaatcaggaagtacccaaagaagtg
atggatttagctctacaaagttcatggttcaggaaatcaagatttaaacaaggtaaagga
aaaaaattgaatgttggaggcgtcggattgggtttcaaagaacgtccaggaatgcgaact
tcagaagatactggcacaaataattcctatgaaagagctattattaaaccacctaaagga
cctgctacaagcagactttctgcaatgaaagaagctttcaaatcccaatataccagtcag
tttaaagcgtcgactgatcactcttgggaaaataatgtgcaaccgcaatttgtaccacca
ttagctccagagccattgcctattcaagataataataaacgcaaagctaaaaagagcaga
tgggaataa
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