Caproicibacter fermentans: HCR03_03000
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Entry
HCR03_03000 CDS
T07651
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cfem
Caproicibacter fermentans
Pathway
cfem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCR03_03000 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfem03021
]
HCR03_03000 (rpoC)
03400 DNA repair and recombination proteins [BR:
cfem03400
]
HCR03_03000 (rpoC)
Enzymes [BR:
cfem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCR03_03000 (rpoC)
Transcription machinery [BR:
cfem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCR03_03000 (rpoC)
DNA repair and recombination proteins [BR:
cfem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCR03_03000 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
LPD26
NusG_add
Motif
Other DBs
NCBI-ProteinID:
QNK41285
UniProt:
A0A6N8I4G6
LinkDB
All DBs
Position
complement(610923..614465)
Genome browser
AA seq
1180 aa
AA seq
DB search
MEFNTFESIKIGLASPEKIREWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWECH
CGKYKRIRYKGKICERCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLMLDIS
PRMLEKVLYFALYIVTDPGDVRELQKKQLLNEKEYRDMREKYEDDFEAGMGAESVQKLLS
EIDLDEVSTELKTELVNATGQKKVRILKRLEVVEAFRLSGNRPEWMIMDAIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKMYQCGLPKE
MALELFKPFVMKRLVETQAAGNIKAARKAVERAKPEVWDALEIVIKNHPVLLNRAPTLHR
LGIQAFEPVLVEGRALKLHPLACTAYNADFDGDQMAVHVPLSSEAQAEARFLMLAAGNLL
KPSDGRPVTVPTQDMVLGSYYLTLDKAGETGEGKCFRDFDEAIMAYNEHVIGLHAKIKVR
RTLVFDGKPETQMIETTVGRMIFNRPVPQDLGYVDRSKPENRFKLEIEFLVGKKQLGQII
DRCIEVHGVPKTSEVLDAIKAQGYRYSTRSGITVSVSDATIPPQKKDIIAEAEKKIDEVS
EQYKMGLLSNGERYNAVLKTWTKATEDVSTALQKNLNRYNPIFMMADSGARGSMSQIRQL
AGMRGLIANTSGKTIEIPIRANYREGLNILEYFISSRGARKGLADTALRTADSGYLTRRL
VDVSQDVIIREDDCGATEGLEIFDIKEGKEIIETMHERLIGRYLLEDFVDEESGEVLVSK
DKLMDENDADIIVSKGVKRIKIRSILECRAKHGVCKKCYGANLATRMPVMVGEAVGIIAA
QSIGEPGTQLTMRTFHTGGVASAEDITQGLPRVEELFEGRKPKHLAIISEIAGTVSFDEI
KKSRHVVVTNSETGDSKSYLIPFGSRIIVSEGDEIKAGTRLTEGSVNPHDVLAITGTQAV
QDYLIEEVQKVYRMQGVDINDKHIEVIVRQMLKKVRVDEAGDTTLLPSALVEKSELEAEN
QIVRDRIAAGETDLQEATATPVLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKVDP
LLGLKENVIIGKLIPAGTGMKCYSDVEIEPTGENLTNDAV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaacacctttgaatccataaagattggacttgcttcacctgaaaaaattcgt
gagtggtcgcacggtgaggtaaaaaagccggaaacgatcaattaccgcacgttaaagccg
gagcgtgacggtttattctgcgaacgcattttcgggcctacgaaggactgggaatgccat
tgcggtaagtataagagaattcgttacaaggggaaaatctgcgaacgctgcggtgttgaa
gtgacgcgcgcgaaggttcgccgtgagcggatgggccacattgaactggcggcccccgtt
tcccacatctggtatttcaaagggatcccttcccgcatgggactgatgcttgacatttcg
cccagaatgctggaaaaggtgctttattttgccctttatatcgtaacggatccgggcgat
gtcagggagctccaaaaaaaacagctcctgaatgaaaaagaataccgcgacatgcgtgaa
aagtacgaggacgattttgaagcgggcatgggagcggaatctgttcaaaagctcctttcc
gaaatcgatctggacgaggtttcgacggaactgaaaactgagcttgtcaatgcgactggc
cagaagaaggtccgcattctgaaacgccttgaagtagtagaggctttccgactttcgggc
aaccgccccgaatggatgattatggacgctattccggttattccgccggatctgaggccg
atggtgcagctggacggcggccggtttgcaacgtccgacctgaacgacctgtaccgccgt
gtcatcaaccgcaacaatcgcttaaaaagacttttggagcttggcgccccggatattatc
gtccgcaacgaaaagcggatgctgcaggaggctgtggacgcgctgatcgataacggccgc
cgcggacgcccggttaccgggccgaacaatcgcccgctaaagtctctttccgacatgctg
aagggcaaacagggccgtttccgccaaaacctgcttggcaaacgcgtcgactattcgggc
cgttcggttattgttgtcggtcctgatctgaaaatgtaccagtgcggacttcccaaagaa
atggcgctggaactttttaagccttttgtcatgaaacgcttggtcgagacacaggctgcc
ggcaatatcaaggcggccagaaaagcggttgaacgagccaagccggaagtttgggatgcg
cttgaaatcgtcataaaaaaccatccggtgctgttgaaccgcgcgccgactctgcaccgt
ctgggcattcaggcgtttgagccggtcctggttgaaggaagagcgcttaagctgcatccg
ctggcctgcaccgcgtataacgcggatttcgacggagaccagatggccgtacacgttccg
ctttcctcagaagcgcaggcggaagcccgcttcctgatgcttgcggcaggcaacctgtta
aagccttccgacgggcgccctgttaccgtgccgacgcaggacatggttctgggttcgtat
tatctgacgctggataaggccggagagacgggtgagggcaaatgcttccgcgactttgac
gaggcaatcatggcttacaacgagcatgtaatcggccttcatgcaaagatcaaagtccgc
aggactttggtattcgacggcaagcccgaaacccagatgattgaaacaaccgtcggacgc
atgattttcaatcgcccggtcccacaggatcttggttatgtggaccgttccaagccggaa
aatcgttttaagctggaaattgaatttctggttgggaaaaagcagctgggccagatcatt
gaccgctgcatagaggttcatggcgtgccgaaaacatcggaggttctcgacgcaatcaag
gcgcagggataccggtattccacccgcagcggaatcaccgtttccgtcagcgacgccacg
attccgccgcagaagaaggatatcattgcggaagcggagaagaagattgacgaagtttcc
gagcaatataaaatgggcttgctgtccaacggtgagcgctacaacgcggttctgaaaacc
tggacgaaagcaacggaagacgtgtccaccgcgctgcaaaagaacctgaaccgctacaac
ccgattttcatgatggctgactccggcgcccgcggttccatgagtcagattcgtcagctg
gccggcatgcgcggcctgattgcaaatacgtccggtaaaacaatcgaaattccgatccgt
gcgaattaccgcgaaggcctgaatattctggaatactttatttcttcgcgcggcgcccgg
aaaggccttgccgacacggctctgcgtacggcggactccggttacctgacccgccgtctg
gtcgatgtttcgcaggatgtcattatccgtgaagacgactgcggagcaaccgagggcctt
gagatctttgatatcaaggaaggcaaggaaattatcgagaccatgcacgaacgtctgatc
ggacgttatctgctggaagacttcgtggacgaagaaagcggagaagtgctggtttccaag
gataaactgatggatgagaatgacgccgacatcatcgtttcaaagggcgttaagagaatc
aaaatccgttcgatcctggaatgccgcgcgaaacacggcgtctgcaaaaaatgttacggc
gcaaaccttgcgacaaggatgcccgttatggtcggcgaagcggtcggtattatcgccgcg
cagtcgatcggcgagcccggcacgcaactgaccatgagaaccttccacaccggcggtgtt
gccagtgcggaagatatcacacagggcctgccccgcgttgaagagctgttcgaaggcaga
aaaccgaagcatcttgccattatcagcgagattgccggtacggtttcctttgacgaaatc
aaaaagagccgccacgtcgttgtgacgaactccgaaaccggagacagcaaatcgtattta
attccgtttggttcccgtattattgtcagtgaaggcgacgagatcaaggccggtacccgt
ctgacggaaggttcggtcaatccgcacgatgttttggcaatcaccggaactcaggccgtc
caggattatctgattgaagaggttcagaaggtttaccggatgcagggcgttgatatcaac
gacaagcatattgaggttattgtacgccagatgctgaagaaagttcgcgtcgatgaggcg
ggcgacacaaccctgctgcccagcgctctggttgaaaagagcgaactggaggccgaaaat
caaattgtacgcgatcgcatcgccgcaggggaaaccgatctgcaggaggcaaccgcgacc
ccggttcttttgggtattacaaaagcgtctctcgcgacggattcattcctttccgcggcg
tccttccaggaaacgacccgcgtgctgaccgatgccgcgatcaagggcaaggtcgatcct
ttactgggccttaaggaaaacgttattatcgggaagctcatcccggcaggaaccggcatg
aaatgctatagtgacgtggaaatcgagccgaccggagaaaacttgacaaatgatgcggtt
tag
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