Caproicibacter fermentans: HCR03_03015
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Entry
HCR03_03015 CDS
T07651
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cfem
Caproicibacter fermentans
Pathway
cfem02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cfem00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HCR03_03015 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfem03021
]
HCR03_03015 (rpoD)
Transcription machinery [BR:
cfem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HCR03_03015 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Glyoxalase
FAST_1
CENP-B_N
Motif
Other DBs
NCBI-ProteinID:
QNK42492
UniProt:
A0A7G8TFV1
LinkDB
All DBs
Position
complement(618940..620028)
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AA seq
362 aa
AA seq
DB search
MPDKKTVIRELIEQGKAKGQLSTKEILDALGELDFDPEQIEKFYDTLESQGVEIVEDFGD
EPLEDLEIDPKIVESEDLETTLSTEGIAIDDPVKVYLKEIGRVPLLSPEEEIDLAIRISS
GDEAAKKRLSEANLRLVVSIAKRYLGRGMQFLDLIQEGNLGLIKAVEKFDYTKGFKFSTY
ATWWIRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHTNGHEPTAEEISYELDMP
VEKVREIMRVAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPADAASHTLLKEQLADVLDT
LTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDF
LD
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacaagaaaacggtgatcagggaactgatagaacagggaaaagcaaaagggcag
ctgtccacaaaggaaatccttgacgcgcttggcgaattggactttgacccggaacagatc
gaaaaattttacgatacgcttgagtcgcagggagttgaaatcgtcgaggatttcggtgac
gaaccgctggaagaccttgaaattgacccgaaaattgttgaaagcgaagaccttgaaacc
actctgagtacagaaggaatcgcaatcgatgatccggttaaggtttatttaaaggaaatc
ggtcgggtgcccctattgagtccggaagaggaaattgaccttgccatccgcatttccagc
ggggacgaggcggcgaaaaaaaggctgtcggaagcaaatcttcgtctggttgtcagtatt
gcaaagaggtatctcggcagaggaatgcaattcctggacctgattcaggagggcaatctg
ggcctcatcaaagcggtggaaaaatttgactataccaagggcttcaaattttccacttat
gccacctggtggattcgtcaggcgattacacgcgcgattgcggatcaggcgagaacaatt
cgaattcccgtgcatatggtcgaaacaatcaataaggtaaaaaaggtttcgagccagctg
ctgcataccaacggccatgaacccacggcggaggaaatttcttacgaactggatatgccg
gttgaaaaagtgcgagaaattatgcgtgttgctcaggaacccgtttcgctggaaacgccg
atcggcgaagaggaagacagccaccttggcgactttattccggacgatgacgctccggcc
ccggcggatgccgcttcccacacgcttttgaaagaacagcttgcggatgtgctcgacaca
ctgacgccaagagaagaaaaggttcttcggctgcggttcggcctggaggacggacgttcc
cgcacactggaagaagtgggcaaggaatttaatgtaacaagagaacgaatccgtcaaatt
gaagcgaaggcgcttcgaaaactgcgtcatccaagccgaagcaaaaagctgaaagatttt
ttggattaa
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