Caproicibacter fermentans: HCR03_12530
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Entry
HCR03_12530 CDS
T07651
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cfem
Caproicibacter fermentans
Pathway
cfem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCR03_12530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfem03019
]
HCR03_12530
03016 Transfer RNA biogenesis [BR:
cfem03016
]
HCR03_12530
Enzymes [BR:
cfem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HCR03_12530
Messenger RNA biogenesis [BR:
cfem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HCR03_12530
Transfer RNA biogenesis [BR:
cfem03016
]
Prokaryotic type
tRNA degradation factors
HCR03_12530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
SPATA25
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QNK39563
UniProt:
A0A6N8I2B9
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All DBs
Position
2530348..2532555
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AA seq
735 aa
AA seq
DB search
MFEKFKVYKTDFAGRPLVVETGKMAQLANGECLVRYGETVVHVAATASAKPRDGVDFFPL
SVDFEEKLYSVGRIPGSYIKREGRPTDKAILTSRVIDRPIRPLFPKDMRNDVSVVCTVMS
VDHDCQPEIAAMVGTSIALSISDIPWNGPISGVSVGYVDGEFVINPNSEQRKSSKMAVTV
ASTADRIAMIEAGAEEIPDDVMYNGIMAGHKANQAIIEFINSIKAEIGKPKFSYPSNEPD
EDMLEAVKDFAIDDVRAALDTDDKNVRDQRLQPVYEKVHERFDPIYPDQQAKIDECMYKT
QKYVVRRWLLDEQKRVDGRKMDDIRPLSAEVGLLPRVHGSGMFTRGQTQVLTVATLGPMS
DEQTFDSIDEQETKRYIHQYNMPSYSVGETKPSRGPGRREIGHGALAERALLPVIPSVDE
FPYTMRLVSEVLSSNGSTSQASICGSTLALMDAGVPIKSPVAGISCGLITEGDRWMTMVD
IQGVEDFFGDMDFKVAGTHAGITAIQMDLKINGLTPDMVREALYKTHKARDYIIDDVMLK
AIPEPRKELSKYAPKMLSISIPLEKIREVIGSGGKVIQKICAECDVKVDVEEDGHVYVSG
IDLDNCKRAISIIDTIANDPEPGSIYNGKVTRLMDFGAFVEIAPGKEGLVHISQLDVKRV
EKVTDVVNIGDAVMVKVLNIDEKGRLNLSRRDALIEVEGLVPENDPEPRPFRRPAPRRDD
RGHSGSKPNYGKPRQ
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaaaattcaaagtgtacaaaacggattttgccggcaggccgcttgtggtggaa
accggcaagatggcacagcttgcgaacggcgagtgcctggtgcgctacggcgaaacggtg
gttcatgtggcggccacggcttccgcaaagccccgcgacggcgtggactttttcccgctt
tccgtcgattttgaggagaagctctattccgtcggcaggattccgggctcttacatcaag
cgcgaaggccgcccgaccgacaaggcgattctgacttcccgcgtgatcgaccgcccgatc
cgcccgctgttcccgaaggacatgcgcaacgacgtttcggtcgtctgcaccgtgatgagc
gtcgaccatgactgccagccggaaatcgccgcgatggtcggcacatccatcgccctcagc
atttcggacatcccgtggaacggcccgatttccggcgtttccgtcgggtatgtggacggg
gagttcgtcatcaacccgaacagcgagcagagaaagagttccaagatggccgtgacggtc
gcttcgaccgccgaccgcattgccatgatcgaggcgggcgccgaggagattccggacgac
gtgatgtacaacgggattatggccgggcacaaggcgaaccaggcgatcatcgagtttatc
aattccatcaaggcggaaatcggcaagccgaaattctcctaccccagcaacgaaccggac
gaggacatgctcgaggcggtcaaggactttgcgatcgacgacgtccgcgccgcgctcgac
accgacgacaagaacgtccgcgaccagcggctgcagccggtctatgaaaaggttcatgaa
agattcgacccgatctaccccgaccagcaggcgaagatcgacgagtgcatgtataagacg
cagaaatatgtggtgcgacgctggcttttggacgagcaaaagcgcgtcgacggccgtaaa
atggacgacatccgcccgctttccgcggaagtcggccttctgccccgcgttcacggctcc
ggcatgtttacccgcggccagacgcaggtgctcaccgtcgctacgctcggccccatgagc
gacgagcagacgttcgacagcatcgacgaacaggaaacgaagcgttatatccaccagtat
aacatgccgtcctattccgtcggcgaaaccaagcccagccgcggtccgggccggcgcgag
atcggccacggcgcccttgccgagcgcgcgctgctgccggtgattccgtccgtcgacgaa
ttcccgtataccatgcgccttgtttcggaggtcctttcgtccaacggctccacctcgcag
gcatccatctgcggctccacgctggcgctgatggacgcgggcgtcccgatcaaatcgccg
gtcgcgggcatttcctgcggactgattaccgagggcgaccgctggatgaccatggtggac
attcagggcgttgaggatttcttcggcgacatggacttcaaggtcgccggaacgcacgcg
ggcatcacggcgatccagatggatttgaaaatcaacggcctgacgccggacatggtgagg
gaagcgctgtataagacgcataaagccagggattatatcatcgacgacgtgatgctcaag
gcgattccggaaccccgcaaagagctttccaaatacgcgccgaagatgctttccatttcg
attccgctcgaaaagatccgcgaggtcatcggctccggcggaaaggtgatccagaagatc
tgcgcggagtgcgacgtcaaggtggatgtggaggaggacgggcatgtgtatgtgtccggc
attgacctcgacaactgcaagcgggcaatcagcattattgatacgatcgcgaacgacccg
gagccgggctccatctataacggcaaggtaacccggctgatggatttcggcgcgtttgta
gaaatcgcgcccggcaaggaaggtctggtgcatatctcccagctggatgtcaagcgggtg
gaaaaggtgacggacgtcgtcaatatcggcgacgcggtcatggtcaaggtgctgaatatc
gatgaaaagggaaggctgaatctttcccggcgcgacgctttgatcgaggtggagggtctg
gttcccgaaaatgatccggagccccgcccgttccgcaggccggccccgcggcgcgacgac
cgcggccactccggctcgaaaccgaattacggaaaaccaaggcaataa
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