Caproicibacter fermentans: HCR03_13385
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Entry
HCR03_13385 CDS
T07651
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfem
Caproicibacter fermentans
Pathway
cfem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCR03_13385 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfem03400
]
HCR03_13385 (mfd)
Enzymes [BR:
cfem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HCR03_13385 (mfd)
DNA repair and recombination proteins [BR:
cfem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HCR03_13385 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
Cas3-like_C_2
T1R_D3-like
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNK39711
UniProt:
A0A7G8T7X0
LinkDB
All DBs
Position
complement(2708882..2712343)
Genome browser
AA seq
1153 aa
AA seq
DB search
MEFLTTAVRGLKEFTDLESAVGSRMLPAAVTGVSGVHKANIIYSLCADRRRRAFVVAGDE
AEAQRLCSDLTAMGLRPLFYPARDFSFHDAEGSSHEYEHQRLQVLERLISGTCDAVVCCI
DAALQLTIPPAELRRRTVTLETGKSVPMERVLGVLSACGYERAAQIEGAGQFAARGGILD
FYPPGGEAPVRAEFFGEEVDSLSLFDPVSQRRTESIPSATIEPAAEALIEHPQILAEQLR
RLASELRGKAAPAARAVLNEQADKLNNGVHLGCADKYLPLLYGEKATLFSYLSQDMLLFV
SEPVKLRERMRSVLWQWGEDLRELLSDGTLCRGLDSYSGDWACALAAFERFGAVYLDAFV
HGGYETPVRTLIGMNARQLSSWGGSIQLLTEDLQNMLFNRWACAVLCGSERAARNVAADL
QAKGINAAFVESPKKIERGEVVVTLGALSGGIEYPGAFFGLITHGRAVLPHVKKQKKKKS
GEAIYSISDLTPGDYIVHASHGIGVFEGIHKIDMNGVVKDYIKVRYAKNDLLYVPVTQLD
MVSKYIGPREDATIRLSRLGGSDWQKAKAKVRRAVKDIADDLIRLYAQRMQAKGHAFAPD
SEWQRDFEAHFEFEETEDQLRCIEEIKSDMEKSAPMDRLLCGDVGFGKTEVALRAAFKCI
TDSMQCAMLVPTTILAWQHYQTITRRMEGFPIRVELLSRFRSAKEQAEIIKKLARGEIDM
VVGTHRLISKDVEFRNLGLIIVDEEQRFGVAQKERLKTRYKDVDVLTLSATPIPRTLNMA
LSGIRDMSVIEEAPHDRHPVQTYVLEHDDGILFEAIRRELRRGGQVYYLHNDVGSIQQVA
TRIQQAIPEAKVGYGHGKMNEQELSEVWRRLIEQEIDVLVCTTIIETGVDVPNVNTLIID
NADHMGLSQLHQIRGRVGRSSRRAFAYLTFKRDKALSEIAQKRLSAIRQFTEFGSGFKIA
MRDLEIRGAGNILGGEQHGHMEAVGYDMYLHLLGEAVDRAKGKPVQEYGEECLVDMQVTA
HIPESYIADLNQRLDIYRRIADIRTREDALDVTDELIDRFGEPPASVNGLIDIALLRNVA
SRLGIREVRQQESSIFLYSDRIDMKKVGALVSALRGRVLLNAGAKPYVSVKIVPDETPLQ
TLSQALRLMEAPS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atggaatttctgacaaccgccgtccgcggactcaaggaatttacggatttggagtccgcc
gtcggcagccggatgctgcccgccgcggtaaccggggtatccggggtccacaaagcaaac
atcatctattcgctctgcgcagatcggcggcgcagggctttcgtcgtcgccggagacgaa
gcggaggcgcagcgcctgtgctccgacctgacggcgatgggcctgaggcccctgttctac
ccggcgcgcgacttttcgttccacgacgcggagggcagctcccacgaatacgaacaccag
cggctgcaggttttggagcgcctgatttcaggcacctgcgacgcggttgtctgctgcatt
gacgccgcccttcagctcaccattccgcccgccgagctcaggcgccgcaccgtcacgctg
gaaacgggcaaaagcgttccgatggagcgggtgctcggcgtcctttccgcctgcgggtac
gagcgcgccgcccagatagaaggcgcggggcagttcgccgcgcggggcggaattctcgac
ttttatccgccgggcggcgaagcgccggtccgcgcggaatttttcggggaggaggtcgac
tccctctccctgttcgaccccgtctcccagcggcggacggaatccattccctcggcgacc
atcgaacccgccgcagaagcgctgatcgagcatccgcagattctggccgaacagctccgc
cgccttgcgtccgagctgaggggcaaggccgcgccggcggcaagggccgttttaaacgaa
caggccgacaagctgaacaacggagttcaccttggctgcgcggacaaatacctgcccctt
ctgtatggagaaaaagcgacgcttttcagctatctttcgcaggacatgctgctgtttgtc
agcgaaccggtcaaattgcgggaacggatgcgaagcgtgctgtggcagtggggcgaggat
ctcagggagcttctttcggacggcaccctgtgccggggactggacagctacagcggggac
tgggcctgtgcgctcgcggcgttcgagcgcttcggcgcggtttacctggacgcgtttgtc
cacggcggctatgaaacgccggtgcgcaccctgatcggcatgaacgcgcgccagctttcc
tcctggggcggcagcatccagcttctgaccgaggatcttcagaacatgctcttcaaccgc
tgggcctgcgccgtgctctgcggctccgaacgcgcggcgcgcaacgtcgcggcggacctt
caggcaaagggaatcaacgcggcgtttgtggaaagcccgaagaaaatcgaacgcggagaa
gtggtcgtaaccctcggcgcgctctccggcgggattgagtaccccggggcttttttcggc
ctgatcacccacgggcgcgcggtactcccccatgtgaaaaagcagaaaaagaaaaaaagc
ggcgaagcgatttacagcatctccgatctgacgccgggggactacatcgtccatgcctcg
cacggcatcggcgtgttcgagggaatccacaaaatcgacatgaacggcgtcgtcaaagac
tacatcaaggtgcgctacgccaaaaacgacctgctgtatgttcccgtgacacagctcgac
atggtttccaaatacatcggcccgcgggaggacgccaccatccgactgagccgtctgggc
ggaagcgactggcagaaggcgaaggcaaaggtgcgccgcgccgtcaaggacattgcggac
gacctgatccgcctgtacgcccagcgcatgcaggccaaagggcacgcgtttgccccggac
tccgaatggcagcgtgattttgaagcgcatttcgaatttgaggaaaccgaagatcagctc
cgctgcatcgaggaaatcaaatccgacatggaaaagagcgcgccgatggaccgcctgctg
tgcggagacgtcggcttcggcaaaacggaggtggccctgcgcgccgcgttcaagtgcatc
accgactccatgcagtgcgcgatgctggtgcccacgacgattctcgcgtggcagcattac
cagaccatcacccgccgcatggaggggttccccatccgcgtcgagctgctttcgcgcttc
cgctcggcaaaggagcaggccgaaatcatcaaaaagctcgcccgcggcgaaatcgacatg
gtcgtcggcacgcaccggctgatttccaaggatgtggaattccgaaacctgggcctcatc
atcgtcgacgaggagcagcgcttcggagtcgcgcagaaagaacggctgaaaacgcgttac
aaggacgtggacgtcctcacgctttcggcgacgccgatcccccggacgctgaacatggcg
ctgtccggcatccgcgacatgagcgtgattgaagaagcgccgcacgaccggcacccggtg
cagacttatgtgctggagcatgacgacggcatcctctttgaagccatccgccgcgagctg
cggcgcggcgggcaggtttactatctgcacaacgatgtgggaagcatccagcaggtcgca
acacggattcagcaggcaattccggaagcgaaggtcggctacggtcacggaaaaatgaac
gagcaggagctttcggaggtctggcgtcgcctgatcgagcaggagatcgacgttctggtc
tgcacgacgattatcgaaaccggcgtggacgtgccgaacgtcaacacgctgattattgac
aacgccgaccacatgggcctgtcccagctgcatcagatccgcgggcgcgtcgggcgttcc
agccgtcgggcgttcgcctacctgaccttcaagcgcgacaaggcgctctccgaaatcgcg
cagaagcgcctttccgccatccggcagttcacggagttcggctccgggttcaaaatcgca
atgcgcgaccttgaaatccgcggcgcggggaacattctgggcggcgagcagcacgggcac
atggaggccgtcggctacgacatgtacctgcacctgctgggcgaagccgtcgaccgcgca
aagggcaagccggtgcaggaatacggcgaagagtgcctggtcgacatgcaggtcaccgcg
catatcccggaaagctacattgccgacctgaaccagcggctcgacatctaccgccgcatc
gcggacatccgcacgcgggaggacgcgctggacgtcacggacgaactgatcgaccggttc
ggcgaaccgcccgccagcgtgaacggcctgatcgacatcgcgcttctgcgcaacgtcgcc
tcccgtctcggcatccgcgaggtgcgccagcaggaaagctcgatcttcctctactccgac
cgaatcgacatgaaaaaggtcggcgcgctggtgtccgcgctgcgcggcagggttctgctc
aacgcgggcgcaaagccctatgtcagcgtgaagatcgtcccggacgaaactccgctgcag
acgctgtcgcaggcgctcaggctgatggaagctccttcctga
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integrated database retrieval system
