Clostridium fermenticellae: D4Z93_00845
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Entry
D4Z93_00845 CDS
T06956
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cfer
Clostridium fermenticellae
Pathway
cfer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D4Z93_00845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfer03021
]
D4Z93_00845
03019 Messenger RNA biogenesis [BR:
cfer03019
]
D4Z93_00845
Transcription machinery [BR:
cfer03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D4Z93_00845
Messenger RNA biogenesis [BR:
cfer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D4Z93_00845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA_25
AAA_22
ABC_tran
ResIII
AAA
Motif
Other DBs
NCBI-ProteinID:
AYD39184
UniProt:
A0A386H0K5
LinkDB
All DBs
Position
178841..180349
Genome browser
AA seq
502 aa
AA seq
DB search
MGNNDIESMTLAQLREIAKGLGVRNISKYRKLELIEEIKKVSPAYIEKDGIVLREKITSK
IDIENNDKNDDDKKDTSISKTEIHTIKNHNNNSNREKNKQQRENEYVKNNEEDKKEKLKE
MINESDSAKGVLEIIENNNYGFLRGKNYLTGPDDIYVSPSQIRRFNLKTGDEVQGKVRTP
KEGEKFKALLYVEKINGENPEKAVGRSPFETLVPIYPNQRLRLETSQSDLSTRLMDIISP
IGKGQRGIIVAPPKAGKTTLLKKIAQSISRNHPKVKLIVVLIDERPEEVTDMQRSIKGEV
IYSTFDEEPEHHTKVAYMVLERAKRMVEQGQDVIILLDSLTRLSRAYNLTITPTGRTLSG
GLDPGALIMPKKFFGAARNIEQGGSLTILATALIETGSRMDDMIFEEFKGTGNMEVHLNR
KLQERRIFPAIDIYKSGTRRDDLLLKDPMEKEAAFNIRKVLYDENNTQNVTEQLINFLSK
TKDNEELVNLISKMDMSKSSNN
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgggtaataacgatattgaaagtatgacgttagcgcaattaagagaaattgcaaaaggt
ttaggggttaggaatatttctaaatatagaaagttagagttaattgaggagataaaaaaa
gtatctccagcttacatagaaaaagatggtatagtacttagggaaaagataacttctaaa
attgatattgaaaataacgataaaaatgatgatgataaaaaagataccagcatttcaaag
actgaaatacataccataaaaaatcataacaataatagtaatcgagaaaaaaataaacaa
caaagagaaaatgaatatgtaaaaaataatgaagaagataaaaaagagaaactaaaagaa
atgataaatgaatctgattcagcaaaaggcgtattagaaataatagagaataataattat
ggttttttaagaggcaaaaattatctaactggaccagatgatatatatgtatccccttcg
cagataagaagatttaatctgaaaacaggtgatgaagttcagggaaaagttagaacacca
aaagaaggagaaaaattcaaggctcttttgtatgttgaaaagattaatggagaaaatccc
gaaaaagcagttggaagaagcccttttgaaactcttgttccaatctatccaaatcagaga
ttaagattagagactagtcaatcagacttatccacaaggcttatggatataatatccccg
ataggaaaaggacaaaggggaattatagttgcaccgcctaaagctggtaaaacaactctt
ctaaaaaagatagcccaaagtatatctagaaatcatcctaaagttaaattaatagttgtt
ttgatagatgaaagaccggaagaagttactgatatgcaaagatctataaaaggagaggta
atttattctacatttgatgaagaaccggaacaccatactaaagtagcgtatatggtactt
gaaagagctaaaaggatggttgaacagggacaggatgtaatcatattattagatagtttg
actagattatccagagcatataatttaactataactcctactggaagaactttatcagga
ggactagatccaggagccttaataatgcctaagaaattctttggagctgcaaggaatata
gaacaaggcggaagccttactatattggccacagcgcttattgaaactggaagtagaatg
gatgatatgatatttgaagaatttaagggtactggaaatatggaagtacacttaaataga
aaacttcaagaaagaagaattttccctgctatagatatatacaaatctggaactagaaga
gatgatcttctattgaaagatccgatggagaaagaggcagcattcaatataagaaaagtt
ttatatgatgaaaataatactcaaaatgtaacggagcagcttataaattttctctcaaag
actaaagataatgaggaacttgttaatttaattagtaaaatggacatgagcaaatcaagt
aacaattaa
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