Clostridium fermenticellae: D4Z93_01030
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Entry
D4Z93_01030 CDS
T06956
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cfer
Clostridium fermenticellae
Pathway
cfer03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cfer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
D4Z93_01030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfer03400
]
D4Z93_01030
Enzymes [BR:
cfer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
D4Z93_01030
DNA repair and recombination proteins [BR:
cfer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D4Z93_01030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
Helicase_RecD
PIF1
AAA
AAA_28
AAA_22
DEAD
nSTAND3
SLFN-g3_helicase
PhoH
UvrD-helicase
HerA_C
AAA_5
NTPase_1
AAA_29
ABC_ATPase
SMC_N
DNA_pol_lambd_f
SRP54
T2SSE
HHH_2
AAA_23
KTI12
RsgA_GTPase
UvrD_C
ATP_bind_1
AAA_17
CbiA
TraI_hel_assoc_N
ABC_tran
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AYD39214
UniProt:
A0A386H0N1
LinkDB
All DBs
Position
209026..211296
Genome browser
AA seq
756 aa
AA seq
DB search
MQELQGNIDSILFQSNKDGYVVAKFKEKVKCRCITIVGYIPYITEGESLKLNGEWITHPH
FGRQFKVETCEQIVPDSKLGIERYLSSGVISGIGPVTARKIVEKFGENTLEVLDSDIGKL
REIEGIGEKKIQLICNSYSKQNEIRNLIIFFQNYGIKVNQCVKIHKQFGNDSIRIVKGNP
YILTEKIPGIGFKTADKIARSTGIQLNSPFRIQSGVNYIINNFCGLGNTYMPFDQLVNKS
IEFLGVSRKEIEENIYENSANGKIKLEDANGRICAFTLPYYYCEMNVTRKILSLVLTKYE
DIKIDVNVEIEKFERDHGVEFASSQKEAINGAFKNGVEIITGGPGTGKTTIINAIAQIFE
EINYKVFMAAPTGRAAKRMSEATGREAKTIHRLLEMGINENQDDALYSRGEGTPLECDVL
IIDEASMIDIILMSNLLKAISIGTRLIIVGDADQLPSVGPGNVLRDLIESKCVKIVRLKE
IFRQSRESLIVVNAHKINNGEMPLLNKKDKDFYFIRCSEPENILNTLIQLVDKRLPNFNK
TWDKMKHIQVLSPMRKGILGVNNLNLKLQEILNAKSKMKKEKEFRDITFRVGDKVMQIKN
NYSLKWTRVSGNGEHEGVGVFNGDVGYIDDIDDDKNTISVIFDNEKRVIYDNLCFDELEL
AYAMTIHKSQGSEFPVGIMPVFMGPPLLMNRNLLYTAITRAKQMVVLVGNLRALKFMISN
DKSFERYSLLKYRIMDIMESGLDANVPETEFEQTEK
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagttacaaggtaatattgacagcatactttttcaaagtaacaaagatggatat
gtagttgcaaaatttaaagaaaaagttaaatgtcgatgtatcacaatagttggatatata
ccatatattacagagggtgagagtttaaaactaaatggagaatggattactcatccgcac
tttggaaggcagtttaaagttgagacatgtgaacaaattgtcccggattctaaacttggt
attgaaagatatctttcatctggggttatatcaggtataggcccggtaacggcaagaaag
attgttgaaaagttcggagaaaacactttagaagttttggatagtgatataggaaaactt
cgcgaaatagaagggataggagagaagaaaatacaattaatatgcaattcctattctaaa
caaaatgaaattagaaatcttataatttttttccaaaattatgggatcaaggtcaatcag
tgtgtcaaaatacacaaacaatttggaaatgattctatacgaatagtcaagggaaatcca
tatattttaactgaaaagataccagggataggatttaaaacagctgataaaatagcaaga
agtaccgggatacaattaaattctccttttagaatacaaagtggtgtaaattatataatt
aataatttttgcggattgggtaatacttatatgccctttgatcaacttgtcaataagtct
atagaatttttgggggtatcgagaaaagaaattgaggaaaatatctacgagaattcagca
aatggaaagataaaattggaagatgctaatgggagaatatgtgcattcactcttccatat
tattattgtgaaatgaatgttacgagaaaaatactttctttagtattgactaaatatgag
gatatcaagattgatgtaaatgttgaaatagaaaagtttgagagagatcatggcgttgaa
tttgcaagttctcaaaaagaagctataaatggtgcttttaaaaatggagtagagataatt
acaggtggaccaggcacgggaaaaacaaccattataaatgcgatagctcagatatttgaa
gaaattaattataaagtatttatggctgctccaactggaagagctgcgaaaaggatgagt
gaagcgacaggaagagaagctaagacaattcatagattacttgagatgggaataaatgaa
aatcaagacgatgcattatattcgcgtggtgaaggaacacctttagaatgtgatgtttta
ataatagatgaagcttcaatgatagatataatacttatgagcaatcttctgaaggcaatt
tcaataggcacaagattaataatagttggagacgcagatcagcttccatcagttggaccg
ggtaatgttcttagagatttaatagaaagtaaatgtgtaaaaattgtaagacttaaagaa
atatttagacagtcacgtgaaagcttaatagttgtgaatgcacataagattaataatgga
gagatgcctttactaaataaaaaagataaggacttttattttataagatgcagtgaaccg
gagaacatattaaatacattgatacaacttgtggataaaaggcttcccaattttaataag
acatgggataaaatgaaacatattcaagtactgtcccctatgagaaagggaattcttgga
gtaaataatttgaatttaaaacttcaggaaatacttaatgcaaaaagtaaaatgaagaaa
gaaaaagaatttagagacattacatttagagtaggtgacaaggttatgcagataaaaaat
aactactcattaaagtggaccagggtatcaggaaatggcgaacatgaaggagtgggggta
ttcaatggagatgttggttatatagatgatatagatgatgataaaaatactatatctgtg
atattcgataatgaaaaaagagtgatatatgataatctatgctttgatgaacttgaactt
gcatatgctatgactatacacaaaagtcagggaagtgaatttccagttggtattatgcct
gtatttatggggcctcccttacttatgaatagaaatctattgtatacggctataactagg
gcaaaacaaatggtggtactagttggaaatttaagggctttgaaattcatgataagcaat
gataaaagttttgagagatattctttattaaaatatagaataatggatataatggagagt
ggattagatgccaatgtaccagaaactgaatttgagcaaacagaaaaatag
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