Clostridium fermenticellae: D4Z93_01275
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Entry
D4Z93_01275 CDS
T06956
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cfer
Clostridium fermenticellae
Pathway
cfer03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfer00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D4Z93_01275 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfer03021
]
D4Z93_01275 (rpoC)
03400 DNA repair and recombination proteins [BR:
cfer03400
]
D4Z93_01275 (rpoC)
Enzymes [BR:
cfer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D4Z93_01275 (rpoC)
Transcription machinery [BR:
cfer03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D4Z93_01275 (rpoC)
DNA repair and recombination proteins [BR:
cfer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D4Z93_01275 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AYD39246
UniProt:
A0A386H0T1
LinkDB
All DBs
Position
257491..261027
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPIKDWEC
HCGKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYVVLDPKETPLLKKQLLNEKEYREAVDKYGDDSFSAGMGAESIKKLL
EEIDLDQLSDDLKKDLKTSTGQKKVRIIRRYEVVESFKKSGNRPEWMIIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRAVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRMYQCGLPK
EMALELFKPFVMKKLVESGLSHNIKSAKRMVERVQPQVWDVLEDVIADHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLACTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAHNI
LKPSDGKPVVVPTQDMVLGSYYLTIDKDNVKGEGRMFSSPDEVIMAYQLKQIDIHAKIKV
KLTKIKDGEKITGIIGTTPGKIIFNESIPQDLGFVDRTIPENEFKLEIDFLVAKKNLGKI
INKCYMKHGATQTSIMLDKIKAKGYHYSTISAITVSTSDMVVPEAKKTLLADADAAVDKI
EKMYRRGFISEDERYERVIEKWTKTTEDVADALMENLDRFNPIFMMADSGARGSKSQIKQ
LAGMRGLMANPSGKIIELPIRSSFREGLDVQEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVREEDCGTHNGFEVSEIKEGNEVIESLAERLTGRYSAEDIIDPNTGEVVVP
GDTYMDMKLAEKVEKTGLKKVKIRSVFTCKSKHGVCAKCYGMNMATAQKINIGESVGIIA
AQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGLAIVSEVSGVVRMEET
KKKRTVVVVTQSGEEVTYDIPFGSRLKVSNGDEINAGDEITEGSVNPHDILRIKGVQGVK
NYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKIKIESQGDTELLPGTMVDMFDFESENE
RIEAEGGEPAEGRVALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKADPLLGLKEN
VIIGKLIPAGTGMTRYRSVKISTDGEEETKQLNDEIQA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattgaataattttgatgcattgcaaatagggctagcttcgcctgaaaagata
agagaatggtcaagaggtgaagtaaaaaaacctgagacaataaattatagaactctaaaa
cctgaaagagatggtttattttgtgagagaattttcgggcctataaaagattgggaatgc
cattgtggaaaatataaaagaataagatataaaggcatagtttgtgataggtgtggtgtt
gaagttacaaaggcaaaagttagacgtgagagaatggggcatatagaacttgcagcccct
gtatctcatatatggtattttaaaggtataccatcacgtatgggattaattttagatatg
tcaccaagggcattagaaaaagtgctttattttgcttcatatgttgttttagatcctaaa
gaaacaccgcttttgaagaaacagcttttgaatgaaaaagaatatagagaagcagtggat
aaatatggtgatgatagtttttcagcaggaatgggtgccgaatcaattaaaaaactatta
gaagaaatagatcttgatcagctttcggatgacttaaagaaggatttaaagactagtaca
gggcaaaaaaaagtaagaataataagaagatacgaggttgtggaatcattcaaaaagtcg
ggaaatagacctgaatggatgattatagatgtaatacctgtaattcctcctgatttaaga
cctatggttcagcttgatggtggaaggtttgcaacatcagatttgaatgatttgtataga
agagttataaatagaaataatagacttaagaagttattagatttaggagcaccagacata
atagtaagaaatgaaaaaagaatgcttcaagaagcagttgatgctcttatagataatgga
agaagaggaagagctgtaactggtcccggaaataggcctttaaaatctttatcagatatg
cttaaaggtaaacaaggaaggttcagacagaatttgcttggaaagcgtgttgattattca
ggacgttcagttatagttgttgggccggaacttagaatgtatcagtgtggactcccaaaa
gaaatggcacttgaactatttaagccatttgtaatgaaaaagttagtagaaagtggatta
tctcacaatataaaaagtgctaagagaatggtagagagagtacaaccacaagtatgggat
gtattagaagatgttatagcagatcatccagtattattaaatcgtgcacctacgcttcat
agacttggaatacaagcatttcagcctgtacttgtagaaggtagagcaataaaattacac
ccgcttgcttgcacagcatataatgctgattttgatggcgatcaaatggcagtgcatgtt
ccattatcagttgaggctcaagcagaagctagatttttaatgcttgctgcacataatata
ctcaaaccatcagatggtaagccagtagtagttcctacacaggatatggtgcttggttct
tattatttaacaatagataaggataatgtaaaaggtgaaggtagaatgttctcgtccccg
gatgaggtgattatggcataccaattgaagcaaatagatatacatgctaagatcaaagtt
aagttgactaagattaaggatggagagaaaattactggaataataggaacaactccaggt
aaaattatatttaatgaatcaattcctcaagatttaggctttgtagatagaactatacct
gagaatgagttcaaattagaaatagattttcttgtcgcaaagaagaatttaggaaaaatt
ataaataaatgttatatgaaacatggagcaactcaaacatctataatgcttgataaaata
aaagcaaagggatatcattattcaacgataagcgctataacagtttcaacttcagatatg
gtggttccagaagccaagaaaactttacttgcagatgcagatgcagctgttgataaaatt
gaaaaaatgtacagaagaggttttatatcagaagatgaaagatatgaaagagttatagag
aaatggactaagacaaccgaagatgtagcagatgctctaatggaaaatctcgatagattc
aatcctatattcatgatggcagactcaggagccagaggttcaaagagtcagataaaacag
ttagcaggcatgagaggacttatggctaatccatcgggtaagattatagaactccctatc
aggtcatctttcagagaaggacttgatgttcaggaatactttatatctacacatggcgct
agaaaaggaaatgcagatacagcacttaaaacagcggattctggatatttgacaagaagg
cttgttgatgtaagccaggatgttatagtaagagaagaagattgtggaactcataatgga
tttgaagtttcggagataaaagaaggaaatgaagttatagaaagtttagcagaaaggctt
acaggaagatattctgcagaggatataatagatcctaatacaggtgaagttgtagttcca
ggtgatacttatatggatatgaagcttgctgaaaaagttgaaaagactggtttaaaaaag
gtaaagataagatcagtatttacatgtaaatccaagcatggtgtttgtgcaaaatgttat
ggaatgaatatggcaactgctcaaaagataaatataggagaatcagttggtataatagca
gctcaaagtattggagaacctggtactcagcttacgatgagaacatttcatacaggtggt
gttgcaggatctgatataactcaaggtcttccaagagttgaagaattatttgaagcaaga
aaaccaaaaggtcttgctatagtaagtgaagtttcaggcgtagtaaggatggaagaaaca
aagaaaaagagaactgtagtagttgtaactcaaagcggtgaagaagtaacatacgatata
ccattcggatcaagacttaaggtatctaatggagatgaaataaatgctggagatgaaata
acagaagggtccgttaatccacatgatatattaaggataaagggtgtccagggagttaaa
aattatcttttatctgaagtacaaaaagtttatagattacagggtgttgatataaatgat
aaacaccttgaagtagtaataagacagatgactagaaagataaagattgaaagtcaagga
gatactgaacttcttcctggaactatggtagatatgtttgattttgaatccgaaaatgaa
agaattgaagcagaaggtggagaaccagctgaagggagagttgctttacttggaataact
aaagcagcacttgctacagattcattcttatcggcagcatccttccaggaaactacaaga
gtacttacagatgcagctataaaaggcaaggcagatccacttttgggtttgaaggaaaat
gtaattataggaaaattaataccggctggtaccgggatgactagatacagatcagtaaag
ataagtactgatggtgaggaagaaacaaagcaattgaatgatgaaatacaggcttag
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integrated database retrieval system
