Clostridium fermenticellae: D4Z93_04770
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Entry
D4Z93_04770 CDS
T06956
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
cfer
Clostridium fermenticellae
Pathway
cfer03030
DNA replication
cfer03410
Base excision repair
cfer03420
Nucleotide excision repair
cfer03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cfer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D4Z93_04770 (polA)
03410 Base excision repair
D4Z93_04770 (polA)
03420 Nucleotide excision repair
D4Z93_04770 (polA)
03440 Homologous recombination
D4Z93_04770 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfer03032
]
D4Z93_04770 (polA)
03400 DNA repair and recombination proteins [BR:
cfer03400
]
D4Z93_04770 (polA)
Enzymes [BR:
cfer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D4Z93_04770 (polA)
DNA replication proteins [BR:
cfer03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D4Z93_04770 (polA)
DNA repair and recombination proteins [BR:
cfer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
D4Z93_04770 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D4Z93_04770 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AYD39866
UniProt:
A0A386H2H7
LinkDB
All DBs
Position
987693..990317
Genome browser
AA seq
874 aa
AA seq
DB search
MSKQRLLVLDGNSIMNRTFYALPPLTNSEGIHTNAVYGFITMLLKMKEEIKPDYIVCAFD
KKAPTFRHNEYKDYKAGRKKMPPELAEQFPIIKDIFNLLSINIFEIDGFEADDIIGTIST
FADNNGIEVYIVTGDRDALQLARNDVKVVITKKGVSEKEIYDKNRMIDEFGVTPTQYIDV
KGLMGDKSDNIPGVPGIGEKTAFKLIKEYKSIENVLTNIDNIKGNKLKENLRQYSEQAIF
SKKLATIVTDVPIEINLSDIKSDDRYDEGALKKLFIKLQFRSLLEKIIPTEKITESELKF
KLVSDLQKLESSAQKILDAAKKDENLYITFKIMDENIYSKSCIDKIFINIGDLSYIMNVK
DIYDASANSTVMILRTIFEDVNIKKISYDVKLPIIVLKKMGIDFNGIDFDTKIAAYLVDS
SRGKYDFETVIEDYLAISVDGEDDKADLKRTILLKELYRVLKDNIDQKNMHELLYDMEQP
LINVLASMEAQGFMVDRDKLVELEDKFKIEIDESKKEIYSMADEEFNINSPKQLGKILFE
KLDLPVIKKTKTGYSTNADVLEKLYDKHPIIEKIIYYRQLTKLYSTYIEGLKAVIDTDNK
IHSSFNQTVTTTGRLSSTEPNLQNIPVKYEMGKEIRKIFIPEDDSVILSADYSQIELRVL
AHIANDNNLIDAFLHHSDIHTKTASEVFNVPIDEVTHTQRSNAKAVNFGIVYGIGDFSLA
KDLKISRKEARDYIDKYFERYPGVKEYLDNIIEKAQKQSYVTTILNRRRSIQEINSSNKM
VREFGKRLAMNTPIQGSAADIIKIAMVNVYDKLNEQGLKSRLILQVHDELILNVYRNEIG
IVKNLVKNEMENAIKLSVPLEVDINIGDSWYDTK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacaaagattactagtacttgacggtaatagtattatgaacagaacattttat
gcacttccaccactaactaattctgaaggaatacatactaatgccgtatatggatttatt
acgatgctgcttaaaatgaaagaagagataaagcctgattatatagtatgtgcttttgat
aaaaaagcaccaacattcagacataatgaatataaagattataaggctggtagaaaaaag
atgcctcctgaattagcagagcaatttcctataattaaagatatattcaatttgctttct
ataaatatatttgaaatagatggttttgaagcagatgatataataggaactatttctaca
tttgcagataataatggtatagaggtatacatagttacaggtgatagagatgcgcttcaa
cttgcaaggaatgatgtcaaagttgtgataactaaaaaaggagttagcgaaaaagaaata
tacgataaaaacagaatgatagatgaatttggagtgacacctactcaatatatagatgtt
aaagggctaatgggtgataagtcggataatatacctggagttccaggaataggtgaaaag
acagcatttaaattgataaaagaatataaaagtatagaaaatgtacttactaatattgat
aacataaagggaaacaagttaaaagagaacctaagacagtatagtgaacaggcaatattc
agtaaaaaacttgctaccattgtaacagatgttcctatagagattaatctttctgatata
aaatcagatgatagatatgatgaaggtgctcttaaaaaactatttataaaacttcaattt
agatctttacttgaaaagataataccaactgaaaagataacagagagtgaattaaagttt
aaattagtaagcgatttacaaaaattggagagttctgcacaaaaaatattggatgcagct
aaaaaagatgagaatttatacattacatttaaaattatggatgaaaatatatattctaaa
agctgtatagataaaatatttataaatataggtgacttaagctatattatgaatgttaag
gatatttatgatgcctccgctaactcaacagttatgatattgagaactatctttgaggac
gttaatattaagaagattagttatgatgtcaaacttcctattatagttttgaaaaagatg
ggtatagattttaatggtatagactttgatactaaaatagctgcttatttagtggattcc
tcaaggggaaaatatgattttgaaactgtgatagaagattatttggctatctctgtagat
ggagaagatgataaggctgatttaaaaagaacaattctgcttaaagagctttatagagta
cttaaagataatatagatcaaaagaatatgcatgaactgctgtatgatatggaacagcct
cttataaatgtacttgcatcgatggaggctcagggatttatggttgatagagataagctt
gtagaacttgaagataagtttaaaattgaaattgatgagtctaaaaaagagatttattct
atggcagatgaggagtttaatataaattctccaaagcaattaggaaaaatcttatttgaa
aaactcgatttgccggttataaagaaaactaaaactggatattcaacaaatgcagatgta
ttggaaaaactttatgataagcatcctataatagaaaaaataatatattatagacaactt
acaaaactatattctacatatatagagggacttaaggctgtaattgatacagataataag
attcattcaagttttaatcaaacggtaacaacaacaggcaggctctcgagtacagaacca
aatttgcagaatataccggtaaaatatgagatgggtaaggagataagaaaaatatttatc
cctgaagatgactcggttatattgtcagctgactattcacaaatagaactgagggttctt
gcacatatagcgaatgataataatctaatagatgcatttttacatcatagtgatattcac
acaaaaacagcatctgaagtgtttaatgttcctatagatgaagtaacgcatactcagaga
agtaatgctaaagccgtaaattttggtatagtttatggtataggagatttcagtcttgcc
aaagatctgaaaataagtagaaaagaggccagggattatattgataaatattttgagaga
taccctggtgtaaaagaatatctagacaatattatagaaaaggctcaaaaacagtcatat
gtaactacaattttaaataggagaagaagcatacaagaaattaattcatcaaataaaatg
gtgagagaatttggtaagagattggcaatgaacacacctatacagggaagtgcggctgat
ataataaaaatagcaatggtaaatgtgtatgacaagttgaatgaacagggacttaaaagt
aggttgattcttcaagttcatgatgaattgatattgaatgtgtacaggaatgaaattggg
attgttaaaaacttagttaagaacgaaatggagaatgctataaaattaagtgtgccttta
gaggtggatataaatataggagatagttggtatgatacaaagtaa
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