Clostridium fermenticellae: D4Z93_04980
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Entry
D4Z93_04980 CDS
T06956
Name
(GenBank) AAA family ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
cfer
Clostridium fermenticellae
Pathway
cfer04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cfer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
D4Z93_04980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfer03019
]
D4Z93_04980
03009 Ribosome biogenesis [BR:
cfer03009
]
D4Z93_04980
04131 Membrane trafficking [BR:
cfer04131
]
D4Z93_04980
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cfer04147
]
D4Z93_04980
Messenger RNA biogenesis [BR:
cfer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
D4Z93_04980
Ribosome biogenesis [BR:
cfer03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
D4Z93_04980
Membrane trafficking [BR:
cfer04131
]
SNARE
SNARE associated proteins
Others
D4Z93_04980
Autophagy
Aggrephagy
Other aggrephagy associated proteins
D4Z93_04980
Exosome [BR:
cfer04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
D4Z93_04980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_14
AAA_16
RuvB_N
AAA_2
AAA_5
AAA_22
TIP49
nSTAND3
AAA_18
RNA_helicase
CDC48_2
Sigma54_activat
ABC_tran
Zeta_toxin
AAA_lid_PRS2_C
IstB_IS21
Mg_chelatase
AAA_28
AAA_33
NPHP3_N
AAA_7
TsaE
AAA_24
Parvo_NS1
NTPase_1
AAA_19
ATPase
CPT
AAA_17
AAA_29
SLFN-g3_helicase
ATPase_2
T2SSE
Molydop_binding
AAA_3
APS_kinase
Motif
Other DBs
NCBI-ProteinID:
AYD39904
UniProt:
A0A386H2M6
LinkDB
All DBs
Position
1031036..1033150
Genome browser
AA seq
704 aa
AA seq
DB search
MGEFNIIKLKVKEGLLEDSRKGIVRMNREDMEQLGVDTGDTIKIKGKRDTSAKVYPSFND
IYGMPFIQMDGTIRRNSGIKLNESVTITKTEIKTARRVALSTTNIFFKCTEDDEKEVKNL
IRGIPVISGDEVTLMIFGHNEIVFHVSGTAPSGPVVIKEETDLIFMESEFSSSKARVTYE
DIGGLNQEIKRIREIVELPLKYPDAFRKLGFEPPKGILLYGPPGTGKTLIARAIASETEA
HFIHVNGPEIMNKFYGESEAKIREIFKEAKSKAPSIIFMDEIDSIAPKREFVHGEVEKRV
VAQFLALMDGLESRGQVIVIGATNILDSLDPALRRPGRFDKEIAILPPNKEGRLNILKIH
TNSMPLHEKVNLRELARITYGFVGSDISALCKEAGMVALRNVLPKIETGGNIPPFKVTME
NFIEALKEIEPSSAREYVTESPDVKWEEVGGLDEIKETMKILLEFPLIDPKLCKEYNFRS
PKGILLTGPSGSGKTLLAKAIGNYVKENFITISGLTLSSHWMGESEKVLHDIFVKAKQSA
PCILFFDEIDAITRSRSNEANNLTDMLISQLIYEFDKLRDFDGVTVLAATNRINLIDSVL
FREGRFEYVIELKLPDIYGRESILKIHAQRLPLTGSIDFRQLAESTEGMTGAELANLCHR
TSFIAITRAMKTGLKVKIDQEIFNQAITKVNSEKNLKGVRTGKS
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagtttaatattattaaattaaaagttaaagaaggtttattggaagattcgcgt
aaaggcatagttcgcatgaatcgagaagatatggaacaattaggagtggatacaggagat
accattaagattaaaggtaaaagagacacttcagccaaagtttatccatcttttaatgat
atttatggaatgcctttcattcaaatggatggaacaatccggagaaatagtggtataaaa
ctaaatgaatcagtaacaattactaaaactgaaataaaaacagcaagaagggtagcttta
tctacgacaaatatattttttaaatgtacggaagatgatgaaaaagaagtaaaaaattta
attagaggaataccggtaattagtggtgacgaagtaacattaatgatttttggtcataat
gaaatcgtatttcatgtaagtggaaccgcaccatcagggccagttgtgataaaggaagaa
acagatcttatttttatggaaagtgagttttcaagttcgaaggcaagagttacatatgaa
gatataggtggcttgaatcaagaaattaaaagaatacgagaaattgttgaattgccattg
aaatatccagatgcatttagaaaattaggatttgaacctccaaagggcattcttctttat
ggtccaccaggtacaggtaaaaccttaattgccagggcaatagcgtctgaaacagaggct
cattttatccatgtaaacggacctgaaataatgaacaaattttatggagaaagtgaggct
aaaattcgggaaattttcaaagaagctaagagtaaagctccaagtataatttttatggat
gaaattgattccattgctcccaagcgggaatttgtacatggtgaggtggaaaaacgagta
gttgcgcaatttcttgcacttatggatggcctggaaagtcgaggacaggttattgtaatt
ggtgctactaatatacttgattcattagatccagcgttaagacgtccgggtagatttgat
aaagaaattgcaatattaccccctaataaagaaggaaggcttaatatacttaaaattcat
acaaacagtatgcctctccatgaaaaagtaaatttgagagagttagccaggattacttat
ggatttgttggttcggatatttcggctttgtgtaaggaagctggtatggtagctttacgt
aatgtcttacctaaaattgaaacaggtggaaatataccaccatttaaagttaccatggaa
aactttattgaagctctgaaagaaattgaaccatcaagtgcccgggaatatgttacagaa
agtcctgatgtaaagtgggaagaggttggaggattagatgaaattaaagaaactatgaaa
attttgcttgagttccctttaattgatcccaaactatgtaaagaatataattttagatcg
cctaaggggattttactaactggtccatctggtagtggaaagactttattagcaaaagcc
atcggtaactatgtaaaagaaaattttattaccataagtggtcttactttatcatctcac
tggatgggagagtcagaaaaggttttgcatgatatatttgttaaagcaaaacaaagtgct
ccgtgcattctatttttcgatgaaatagatgccataactcgttctagatctaacgaagca
aataatttgacagatatgcttataagtcaactaatatatgaatttgacaagttaagagat
tttgatggagtaactgtattagctgctacaaatagaataaatttgattgattcagtttta
tttagggaagggcgctttgagtatgtaatagaactaaagcttccagatatttatgggaga
gaatctattttaaaaattcatgctcaaaggttacctttaacaggcagcattgattttagg
caattagctgaaagtacagaaggaatgacaggagcagaactggctaatttatgccataga
acttcatttatagcaattacgagagcaatgaaaacagggttaaaggtcaaaatagatcag
gaaatttttaatcaggccattaccaaagtaaattctgaaaagaacttaaagggggtgagg
acaggaaaaagttaa
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