Clostridium fermenticellae: D4Z93_05810
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Entry
D4Z93_05810 CDS
T06956
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cfer
Clostridium fermenticellae
Brite
KEGG Orthology (KO) [BR:
cfer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfer03032
]
D4Z93_05810 (topA)
03400 DNA repair and recombination proteins [BR:
cfer03400
]
D4Z93_05810 (topA)
Enzymes [BR:
cfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D4Z93_05810 (topA)
DNA replication proteins [BR:
cfer03032
]
Prokaryotic type
DNA Topoisomerases
D4Z93_05810 (topA)
DNA repair and recombination proteins [BR:
cfer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D4Z93_05810 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
DmmA-like_C
Zn_ribbon_GRF
OB_HELZ2
TMIE
Zn_ribbon_3
DUF6090
Motif
Other DBs
NCBI-ProteinID:
AYD40056
UniProt:
A0A386H301
LinkDB
All DBs
Position
1202155..1204242
Genome browser
AA seq
695 aa
AA seq
DB search
MGQKLIIVESPAKAKTIGKYLGKNYTVQASMGHVRDLPKSQLGVDIDNEYNPKYITIRGK
GELLDKIRKEAKKSDKIYLATDPDREGEAISWHLSHVLKLDEDQDCRIEFHEVTKDAVKN
AIKNPRKIKLDLVNAQQARRVLDRLVGYKISPILWNKVRWGLSAGRVQSVALKMICDREK
EIKGFIPKEYWTIECELHKEKMKKAFKVKLTTFNKKKIEIKSKEETDKIIKELENGEFIV
KSIKKSIKTRNPLPPFTTSTLQQDAYKKLSFSTKRTMSVAQQLYEGIDVKGYGTVGLITY
MRTDSVRIALEAQNSCKDFIEEKFGREYTVEKFRNFKGKKNIQDAHEAIRPTNVQITPEI
AKENLKPEQYKLYSLIWNRFVASQMAECTINAISVDIYNEKYGLKANASSIKFDGFMKVY
DYTTDDEGNNTNFPTLEEGEKLVRKSIEGKQHFTQPPARYSEASLVKTLEENGIGRPSTY
APIISTLLARKYVERLKKTLEPTELGEIVNNIVSEYFKQIVDIEFTAEMEKKLDDVEEGK
EKWNKVVDEFYSPLKEAIDVAEKEIAKVTIEDKVTDIKCEKCGRNMVIKHGRFGEFLACP
GYPECKNTKPIVQELDVKCPKCGGKVLVKKSKKGRKFYGCSNYPECDFISWFEPTLTKCS
VCGSYMVKKYSKAKGNYLQCSNDECKNIQQVEDKN
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgggacagaaattaattatagttgaatcaccagcgaaagccaaaaccataggaaaatat
ttaggtaaaaattatacggttcaagcatctatgggacatgtaagggatctacccaagagt
caattgggagttgatatagataatgagtacaatcctaagtatataacgataagaggaaag
ggagaacttcttgataaaataagaaaagaagcaaaaaaaagtgataagatctaccttgct
actgaccctgatagagaaggggaggctatttcgtggcatttatctcatgtacttaaattg
gatgaagatcaggattgcaggatagaatttcatgaggtaacaaaagatgctgttaaaaac
gctataaaaaacccacgcaagataaagctggatttggtcaatgcccaacaggccagaaga
gtacttgataggttggttggttataagataagtcctatactatggaataaggtaagatgg
ggattaagtgcgggtagagtacaatctgtagctttaaaaatgatatgtgacagagaaaag
gaaataaaaggatttatacccaaagaatattggacaatagagtgtgagcttcataaggaa
aagatgaaaaaagcatttaaagttaaacttacgacatttaataaaaagaaaatagaaata
aagagcaaagaggagactgacaaaataataaaagaactagaaaatggagagtttattgta
aaatcgataaaaaagtcaataaagaccaggaatccgcttcctccatttacaactagtacg
cttcaacaggatgcatataaaaaattgagtttttcaactaagagaactatgtcagttgct
cagcaattatacgaaggcattgatgttaaagggtatgggacagttggacttataacctat
atgagaacagattctgtgagaatagcacttgaagcacaaaattcgtgtaaggattttata
gaggagaaattcggaagagaatatactgtagagaaatttagaaactttaagggtaaaaaa
aatatacaagatgcccatgaagctataagaccaactaatgttcagattacacctgaaata
gctaaggaaaatttaaaaccagaacagtacaaattatattcgcttatatggaatagattt
gttgcaagtcaaatggcagagtgcacgattaatgctatatccgtagatatatataatgag
aaatatggacttaaggcaaatgcttcaagtataaagtttgatggttttatgaaggtatat
gattatacaactgatgatgaagggaacaatacaaattttccgactttggaagaaggagag
aaattagttagaaaatctatagaaggaaaacagcacttcacacagccacctgctagatat
tctgaagctagccttgtaaaaacactcgaagagaatggaataggaaggccgagtacgtat
gctccaataatatcaacacttcttgcccgaaagtatgttgaaagattaaaaaagacatta
gagccaaccgaattgggtgaaatagtaaataatatagtaagcgaatattttaagcagata
gtcgatatagaatttaccgcagaaatggagaaaaaacttgatgatgtagaagagggtaaa
gaaaaatggaataaggtagttgatgagttttatagtccgcttaaagaggctattgatgtt
gcggaaaaggaaattgcgaaggtgacaatagaggataaagtaacggatataaaatgtgag
aaatgcggaagaaatatggttataaaacatggcagatttggagaatttcttgcgtgtcct
ggatatcctgaatgtaaaaataccaaacctatagttcaagaattagatgtaaaatgtcct
aagtgtggaggaaaggttttagttaaaaaaagtaaaaaaggcagaaaattttatggctgc
agtaactatcctgagtgtgattttataagttggtttgaacctactttaaccaagtgttct
gtatgtggaagttatatggttaaaaaatatagcaaggctaaaggcaattatttgcaatgc
tctaatgatgaatgcaaaaatatacaacaagtagaagataaaaattaa
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