Clostridium fermenticellae: D4Z93_05900
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Entry
D4Z93_05900 CDS
T06956
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
cfer
Clostridium fermenticellae
Brite
KEGG Orthology (KO) [BR:
cfer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfer03016
]
D4Z93_05900 (truB)
Enzymes [BR:
cfer01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
D4Z93_05900 (truB)
Transfer RNA biogenesis [BR:
cfer03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
D4Z93_05900 (truB)
Prokaryotic type
D4Z93_05900 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
AYD40074
UniProt:
A0A386H340
LinkDB
All DBs
Position
1219924..1220799
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AA seq
291 aa
AA seq
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MDGVLNINKPVGISSFDVVRKIRKLTGIKKVGHTGTLDPEASGVLPVCIGSATKLVNHIM
SDCKVYRVELMLGVVTDSYDREGTIVRNSRVDLRNDEIKKAIKSFEGEINQVPPMYSALK
VNGRRLYSLARQGIEIEREPRKVKIYSINILELNLPKVIFTVKCSKGTYIRSLCYDIGEK
LKCGGSMWNLQRIETGNFNIRNSVELDELTKDNIYKYIISMDKVLFDYPEIHIDEKYEKL
LLNGVEMNNPFIIRNIQKNEFHRVYIGKDKFIGIGIRKDSGFKMTKLLLQR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggatggagtattaaatataaacaaaccagttggaattagttcctttgatgtagttaga
aagattagaaaattaactggtataaagaaggttggacatactggcactttagacccggag
gcatcaggagttttacctgtatgtattggatctgcgacgaaattagttaatcatataatg
agtgactgtaaggtgtatagagttgaacttatgcttggtgtagttactgatagctatgat
agagaaggaactatagttagaaattcaagagtagatttaagaaatgatgaaataaaaaag
gcaataaagagttttgaaggcgaaataaatcaagttccaccaatgtattcagctttgaag
gtgaatggaagaaggctttattcacttgcaagacagggtatagaaatagaaagagagcct
agaaaagtaaaaatttattctatcaatatattagaattgaatcttccaaaagttattttt
actgtaaaatgttctaagggcacatatatcagaagtttatgttatgatataggtgaaaag
ttaaagtgtgggggatcaatgtggaatcttcaaagaattgaaacgggaaatttcaatata
agaaattctgtagaacttgatgaacttacaaaagataatatatacaaatatattatatcc
atggataaagttttgtttgattatccagagattcatatagatgaaaaatatgaaaaatta
ttattaaatggagtagaaatgaataatccatttattataagaaatatacaaaagaatgaa
tttcatagagtctatattggaaaggataaatttattggtataggaattagaaaagattct
ggatttaaaatgacaaagttattgttacagaggtag
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