Clostridium fermenticellae: D4Z93_12520
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Entry
D4Z93_12520 CDS
T06956
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfer
Clostridium fermenticellae
Pathway
cfer03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D4Z93_12520 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfer03400
]
D4Z93_12520 (mfd)
Enzymes [BR:
cfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D4Z93_12520 (mfd)
DNA repair and recombination proteins [BR:
cfer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D4Z93_12520 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
IstB_IS21
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AYD41285
UniProt:
A0A386H6Z4
LinkDB
All DBs
Position
complement(2714507..2718031)
Genome browser
AA seq
1174 aa
AA seq
DB search
MRLQGMLNPLINNKDFKGLLNNIEDKRFPIGVYGVSESGRNYIVDGVYEEIDKPVLILTH
SDVEARKLYEDMSIYVPNVYYFPTKEVVFYNIDAISGDLRWERLKIIKHILEPPKKKIII
TCIDALASVYIPVELYKKYMFDIKTNDTVDFEKLSQKLIQCGYERVELVDNKGQFSIRGG
ILDIYCPTSSEAYRIELFGDEVDSIRSINLESQRSIEKIDSIKVFPAKEIILSEDIIKKG
YSAIKDDLKQIVDKLRSNKKKEAAENISKIINRNLEVLNESWSFETIDSFLPYFYETTSS
FFDYVKDYLIIIDDVQRCFGKLDSVYYEFQENYKRFLEQGSILPKQSMLLLSRNYIPQVL
EKKPVITLDSISKSRKVLKPKVVMDVSQITLSSYHGRIGLLIQDIKEKKDKSYKIVILSG
TRPRGERLVDSLRENDIESTYKDVIHSIEPGEVVITFGSQLNGFEYPELKLSVISDKEVF
GEAKRKTHSKTPKKGVSKIKSFTELKPGDYVVHANHGIGIYKGIHQLDVQGHKKDYLELM
YDSNDKLYVPVEQLDLVQKYIGSEGKIPKINKLGGSEWAKAKRKVKRSIEEIAEDLVKLY
AVRSTVKGYKFSKDTIWQKQFEDEFPYDETPDQLTAISEIKSDMESDKPMDRLLCGDVGY
GKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYNNFVKRFSDFPIRIDMISRFRTVSQQ
KNSIKALKEGDIDIIIGTHRILQKDVEFKDLGLLIVDEEQRFGVTHKEKIKKLRKNIDVL
TLSATPIPRTLHMSLVGVRDISIIETPPEERYPIQTYVVEYNDQLIRDAILREIGRGGQV
YFVYNRVESIKDIASYVSKLVPEASVAVAHGQMQERELENIVSQFMKNDYNVLVTTTIIE
TGMDIQNVNTMVIYDADKMGLSQLYQLRGRVGRTNRMAYCYLTYRKDKVLTEVAEKRLKA
IKDFTELGSGFKIALKDLEIRGAGNMMGASQHGHMASIGYDLYCRMLEDTIKVIKGELDE
EPVETTVDLKVDAYIPSDYIKDEVQKIEIYKKIAAIGSYDDMMDIEQELEDRFSIIPDSI
NNLINISYVRSISKNLGVKEIKEKGGEILFLFENQNRIDSKVMSALLKEYSKKISIKFMD
TPGFGYKIKDMKRDSLVLKVREIVEYMASIYEQK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgagactacaaggaatgttgaatcctttgataaataataaggattttaaaggattatta
aataatatagaagataaaagatttccaataggtgtgtatggggtatctgaatctggcaga
aactatatagtggatggagtgtatgaggaaatagacaagcctgttctgatacttacccat
agcgatgtggaagctagaaagttatatgaagatatgtctatttatgtaccgaatgtatat
tactttcccactaaagaagtagttttttataatatagatgcaatatccggagatttgaga
tgggaaagattgaagataattaagcatatacttgaacctcctaaaaagaagataataata
acgtgtatagatgcactagcttcagtgtatattccggttgaactttataaaaagtatatg
tttgatattaaaactaatgatacagttgattttgagaaacttagccagaaactcatacaa
tgtggatatgaaagagttgaattagttgataataaaggacagttttccataagaggagga
attctggatatttattgtccaacttctagtgaagcatatagaatagagttatttggagat
gaagttgactctataagaagtataaatctagagtcacaaagaagtattgaaaagattgat
agtataaaagtatttccggcaaaagaaataatactaagtgaagatataataaaaaaagga
tattcagcaataaaagatgatttgaaacagattgttgacaagttaaggtcaaataagaaa
aaagaagctgctgaaaatataagtaagattataaatagaaatttagaagtattaaatgaa
agttggagttttgaaacgatagatagttttcttccttatttttatgagactacttcgtcc
ttttttgattatgtaaaagattaccttattataatagatgatgttcagagatgctttgga
aaattggatagtgtatactatgaatttcaggaaaattataaacgcttcttagaacaaggc
agtattcttccaaagcaaagtatgcttttgttaagtagaaattatattccacaagtattg
gaaaagaagcctgttatcacgctggattctatatcaaaatctagaaaagtattaaagcca
aaggtagtaatggatgtatctcaaataaccttgagcagttatcatggcagaatagggtta
cttatacaggatataaaggaaaagaaagataaaagctataaaatagtcatactttcaggt
acacgaccgcgaggagagagacttgttgacagcttgagggaaaatgacatagaaagtact
tataaagatgtaatacatagtattgaacctggagaagttgtgataacatttggaagtcaa
ttgaatggatttgaataccctgaattaaagctttctgtaatatcggataaggaggtattt
ggagaagctaagagaaagactcacagcaaaactcctaaaaagggtgtaagtaagataaaa
agttttactgaacttaagccaggtgactatgtagttcatgctaatcatggtatagggatt
tataaagggattcatcaacttgatgtacaaggacataagaaggattatcttgaacttatg
tatgattcaaatgataaattatatgtgcctgtcgagcagcttgatttagttcaaaaatat
ataggttctgagggaaagataccaaagataaataaattgggtggatccgagtgggcaaag
gcaaaaaggaaggttaaaagatctatagaggaaatagcagaggatcttgttaaattatat
gctgttagatccacagttaaaggatataagttttcaaaagatactatatggcaaaaacaa
tttgaagatgaatttccgtatgatgaaacaccggatcaacttactgctataagtgagata
aaatcagacatggagtcagataaaccaatggacagacttttatgtggagatgtgggatat
ggtaaaactgaggttgctgtaagggctgctttcaaagcagttatggaaggaaaacaagta
gcatttctagttccgactacgatacttgcacagcagcattataacaattttgtgaaaaga
ttttcagattttcctataagaatagatatgataagtagattcagaacagtatctcaacag
aaaaatagtataaaagcacttaaagaaggggatatagatataattataggaacacataga
atacttcagaaggatgttgaatttaaagatttagggctcttaatagttgatgaagaacaa
agatttggtgtaacgcataaggaaaaaataaagaaacttagaaagaatatagatgttttg
acattgagtgcgacacctataccacgaacacttcatatgtctctggttggagttagggat
ataagtattatagaaacccctccagaggaaagatatccaattcagacttatgttgttgaa
tataatgatcaattgataagagatgcaattttaagagaaattggaagaggcggacaggtt
tactttgtttataatagggttgaaagtataaaagatattgcatcttatgtaagcaaatta
gttccagaggctagtgtagctgtagcacatggtcaaatgcaggaaagagagctagaaaat
attgtatctcaatttatgaaaaatgactataatgtacttgtaactacgaccataattgag
acaggtatggatatacagaatgtaaatactatggtaatatatgatgcagataaaatggga
ttatcccagttgtatcaattaagaggaagagttggcagaacaaatagaatggcatattgc
taccttacgtatcgaaaggataaagtactaactgaggttgctgagaaaaggcttaaagct
ataaaagactttacagaacttgggtcaggttttaaaattgcattaaaagatcttgaaata
agaggagccggtaatatgatgggagcttcacagcatggacatatggcttctattggttat
gatttatattgcagaatgcttgaggatactataaaggttataaagggagaactagatgag
gaacctgtagaaactactgtggatttaaaggttgatgcttatataccatctgattatata
aaagatgaggtgcaaaagatagaaatctataagaagattgcagcaattggttcttatgat
gatatgatggacattgaacaagaattagaggatagattttcaataattcctgattcaata
aataaccttataaatatatcttatgttaggagtattagtaagaatcttggcgtaaaggaa
attaaggaaaagggtggtgaaatactatttttatttgaaaatcaaaatagaatagacagc
aaagttatgagtgccttattaaaagaatactctaaaaaaataagtataaaattcatggat
actcccggctttggatataagattaaggacatgaagagggatagtttagtcttaaaagtc
agagagattgttgaatatatggctagtatttatgaacaaaaataa
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