Corynebacterium freiburgense: CFREI_03830
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Entry
CFREI_03830 CDS
T09215
Symbol
uvrD3
Name
(GenBank) ATP-dependent DNA helicase UvrD1
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cfg
Corynebacterium freiburgense
Pathway
cfg03420
Nucleotide excision repair
cfg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFREI_03830 (uvrD3)
03430 Mismatch repair
CFREI_03830 (uvrD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfg03400
]
CFREI_03830 (uvrD3)
Enzymes [BR:
cfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFREI_03830 (uvrD3)
DNA repair and recombination proteins [BR:
cfg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFREI_03830 (uvrD3)
MMR (mismatch excision repair)
Other MMR factors
CFREI_03830 (uvrD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
DEAD
OstA_2
Motif
Other DBs
NCBI-ProteinID:
WJZ02065
LinkDB
All DBs
Position
806931..809360
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AA seq
809 aa
AA seq
DB search
MTNLDSSPFPAQKAEVPSNTSTSSMQPAQAFIGTGPDVLAGLNPQQRAAVEHIGSPLLIV
AGAGSGKTAVLTRRIAFLLGHRRVQPGQILAITFTNKAAAEMRDRVADLVGPVAERMWVS
TFHSTCVRILRQHAKLVEGLNTNFTIYDSDDSKRLISMIIKDFDLDAKKFSARGLVSAIS
NFKNELLGPDDAQQQADQTKQPWDRVVAQVFREYQQRLRRANAVDFDDLIGEVVGIFRRH
PEVVKHYRRRFRHVLVDEYQDTNHAQYVLVSTLVGSPDSEVPPSELCVVGDADQSIYAFR
GATIRNIEEFERDYPQAHTILLEQNYRSTQTILSAANAVIEKNQGRRKKSLWTALGEGQP
IIGYVADNEHDEARFIANEIDTLVDAGLAFSDIAIMYRTNNSSRALEDVFIRTGIPYKVV
GGTRFYERKEIRDILAYLRAVLNPDDVMSVQRIINTPRRGIGDKAQAIIGLYADQQRIGY
WQALIDAAAGDVDMLGARGRNAVARFVETLAGLREQSTELVDETTGLPDIAGLIRAVLDM
TGYQAELEKSRDPQDGARLDNLNELVSVAREFSSEAANRLAYQEELTEGELSPGSLQAFL
ERVSLVADADQIPDDGQGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRAFSDMNELAE
ERRLAYVGITRARQCLYLTRAMVRSSWGEAMTNPPSRFLQEIPEKLVEWRREEPQYNGFG
EDDWAPLDWGQSSYRSAPRTVPRGVPKAKKAPGKSLVLAVGDRVNHEKYGLGTVVETFGA
GAVATATIDFGSAGKVRLIVSGGVPMEKL
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatttagattcttccccgtttcctgctcaaaaagccgaagtccctagcaataca
agtacttcttccatgcagcccgcccaggcgtttattgggactggtccggatgtgttggct
ggtttaaatccgcagcaacgtgctgcggtagagcatattggtagcccattattgattgtt
gcgggtgccgggtcgggtaagacagcggtacttactcgtcgcattgcatttttacttggg
catcgtcgggtgcagccggggcagattttggccattactttcactaataaggctgctgca
gaaatgcgtgatcgggtggctgatttggtggggccggtggcggagcggatgtgggtgtct
acgtttcactccacgtgtgtgcggattttgcgtcagcatgcaaagttggtggaggggctc
aatactaatttcactatctatgattcggatgattcaaagcgcctgatctcaatgattatt
aaagattttgatttggacgccaagaagttttcggctcgtggtttggtatcggcgatttct
aattttaaaaatgagttattgggtccggatgatgcgcagcagcaggcagatcaaacaaaa
caaccgtgggatcgggtggttgcccaggtgtttcgggagtatcagcagcgtttgcgtagg
gcaaatgcggttgattttgatgatttaattggggaagttgttggtattttccggcggcat
cctgaggtggtaaagcattatcggcggcggttccggcatgtgcttgtagatgaataccaa
gacaccaaccatgcgcaatatgtattggtttctacccttgtaggaagccctgattccgag
gtgccgccaagcgaattgtgtgttgttggtgatgctgatcagtcgatttatgcatttcgc
ggtgccacgattcgtaatattgaggaatttgaacgggattatccccaggcacatacgata
cttttggagcagaattatcgttccacgcagacgattctttctgctgcaaatgcagtgatt
gaaaagaatcaagggcggcggaaaaagagtttatggactgccttgggggaaggacagcca
attattggctatgttgcagataacgagcatgatgaagcgcggtttattgccaatgagatt
gatactttagttgatgctgggttggcgttttctgatatcgccataatgtatcgaacaaat
aactcatcccgcgccctcgaagatgtatttattcgaacgggtattccctataaagttgtg
gggggcacgcgattttatgagcgcaaagaaatccgcgatattctggcctatttgcgggct
gtactgaacccggatgatgtgatgtcagtgcagcggattattaatactccgcgccgtggc
atcggggataaggctcaggcgattattggtctttatgctgatcagcaacgtattggctac
tggcaggcgcttatcgacgccgcggccggcgacgtcgatatgcttggtgcgcggggccga
aacgcggtggcacgctttgtggaaaccttagcggggctgcgggagcaatctactgaatta
gttgatgagactacggggttgccggatattgcgggattgatccgtgcggtattggatatg
acgggatatcaagccgagttggaaaagtctcgtgacccacaggacggtgcccgcctagat
aacttgaatgaattggtatccgtggcccgggagtttagctcagaggctgcaaatcgtctt
gcttaccaggaggaactcacggaaggggaattatcaccagggagtctgcaggcgtttttg
gagcgggtgtctctggtggcggatgctgaccagattcccgatgatgggcagggcgtcgta
acgcttatgaccctgcataccgcaaagggcctggaattcccggtggtatttttaacgggc
tgggaggacggccaattcccgcatatgcgcgcgttttcggatatgaatgagctagcggaa
gagcgtcgtttggcatatgtgggcattacccgggcccggcagtgcctgtacctcacacgt
gcgatggtgcgtagttcttggggcgaggcgatgacaaatccgccgtcccggtttttgcaa
gaaattcctgagaagctagtggagtggcgtcgggaagaaccccagtacaacggttttggg
gaagatgattgggcacctttggattgggggcaatcttcttatcgaagtgcacctcgcacc
gtgcctcggggcgtgcctaaggctaagaaagcccccggaaaaagcttggtgcttgccgtg
ggagaccgtgtaaaccacgaaaaatacgggcttggcactgtagttgagacctttggtgca
ggcgccgttgcaactgccactatagattttgggtctgctggtaaggtgcggctcattgtc
agtggcggtgtgccaatggaaaagctttag
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