Corynebacterium freiburgense: CFREI_05140
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Entry
CFREI_05140 CDS
T09215
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfg
Corynebacterium freiburgense
Pathway
cfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFREI_05140 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfg03019
]
CFREI_05140 (deaD)
03009 Ribosome biogenesis [BR:
cfg03009
]
CFREI_05140 (deaD)
Enzymes [BR:
cfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFREI_05140 (deaD)
Messenger RNA biogenesis [BR:
cfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFREI_05140 (deaD)
Ribosome biogenesis [BR:
cfg03009
]
Prokaryotic type
rRNA helicases
CFREI_05140 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
AAA_22
DUF3420
Motif
Other DBs
NCBI-ProteinID:
WJZ02324
LinkDB
All DBs
Position
1086113..1088167
Genome browser
AA seq
684 aa
AA seq
DB search
MSITDNVTGGVEEPDNVILSESQETSQDGAVDAAEDIRDANTSEDTGSTQGFENLGLPSE
VLSAIQKVGFETPSPIQSQTIPVLMQGRDVVGLAQTGTGKTAAFALPILARIDAAVRAPQ
ALVLAPTRELALQVADSFQSFADHLGRLNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRV
IDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILADTPDEKQVALFSATMPNGIRR
LSKQYLTDPVEITVKSETRTNTNISQRYLSVAHRNKLDALTRILEVTEFEAMIMFVRTKH
ETEELAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISH
VLNYDIPHDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNAKLVEMDLPTV
DEVNDSRKAKFADAITESLEDNQLAVFRNLVKAYSEEHDVPLEDIAAALATQAQAGNEFL
MKEPPPERRRDRGERRGRDRDRFERDRGDRFDRDRGGDRFDRSGKEMTVYRLAVGKRQHV
RPGAIVGALANEGGLNSRDFGRISIAVDHTLVELPKDLPQEVFDALEDTRISGQLIHIEP
DPGAPKGRPAFHRKGGRFDRDNDRGFRGGRGERGGRGRDGRDGFRDRDRGNFRKRDYNRE
DRSFRHRDRGDRGSQGHRHHGGED
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgtcaccggcggcgtagaagagccggacaacgtcattttgtcg
gaatctcaggaaacttcgcaggatggggcagttgacgctgccgaagacatcagggatgcg
aatacttctgaggacaccggctccacgcaaggtttcgaaaacctgggtcttccctcggaa
gttctttccgcaatccagaaggtgggcttcgaaactccgtcccctatccaatctcaaact
atcccggtgctgatgcagggccgcgatgttgtaggtttggcgcagaccggtacgggtaaa
accgccgcgttcgctcttcctatcctcgcgcgtatcgacgccgcggtacgtgcgccgcaa
gctctcgtgttggcccccacacgcgaactggcgctacaagtagctgactcgttccaatct
tttgccgatcaccttggccgattgaacgtgttgccgatttacggcggccaagcatatggc
attcaactttcgggtctccgtcgcggtgcccatattgttgttggaacacctggtcgtgtt
atcgaccaccttgaaaaaggctcactagatatttccggtctgcgcttcttagtgcttgat
gaagccgatgaaatgttgaatatgggtttccaagaagatgtggaacgcatcctcgccgat
accccggatgaaaaacaagttgcgctgttttctgccactatgccaaatggaattcggcgt
ctgtctaagcagtacctgactgacccggtagaaatcaccgttaaaagcgaaacccgcaca
aatacaaatatttcacagcggtacctttcagtagctcaccgcaataaacttgatgccctt
acccgcattcttgaagttactgaatttgaggccatgattatgttcgtgcgcaccaagcac
gaaaccgaagaattggccgaaaagctccgtgcccgtggcttctcagcagccgccattaat
ggcgatatcgcccaagcccagcgcgaacgtactgttgatcagctcaaagatggtcgttta
gacattctggtagcaactgatgttgccgcgcgcggcctagacgtagaacgtattagccac
gtattgaactacgatattccacacgacacggaatcctatgttcaccgcattggccgaacc
ggccgcgcgggccgcaccggtgaagcaatcctttttgtgaccccacgcgaacgtcgtatg
ttgcgctcaattgaacgtgcgacaaatgcgaaactcgtggaaatggatttaccgacggtc
gacgaggttaatgactcccgcaaagccaagtttgcggatgccattacggagtcactcgaa
gataaccaacttgcagtattccgaaaccttgtaaaggcatattcggaagaacacgatgtt
cctttggaagacattgcagccgcattggcaacgcaagcccaagccggcaatgaattcctt
atgaaggaaccaccaccagaacgacgccgcgaccgtggcgaacgccgaggacgtgaccgg
gaccgttttgaacgggatcggggagatcgctttgaccgagatcgtggtggcgaccgcttc
gaccgctccggtaaggaaatgaccgtttatcggctcgcggtaggcaaacgccaacatgta
cgtccaggtgcaattgttggtgcgcttgctaatgaaggtggcctcaattcacgtgacttc
ggccgcattagcattgctgtagatcacacacttgtagagcttccaaaagaccttccacaa
gaagtctttgatgcgctcgaggacaccaggatctccggacaacttatccatattgagccc
gatccaggtgcaccaaagggtcgtccagccttccaccgtaaaggtggccgattcgatcgc
gacaacgatcgtggattccgtggtggacgtggcgaacgaggtggccgtggtcgcgacgga
cgcgatgggttccgtgaccgcgatcgtggaaacttccgcaagcgtgattacaaccgtgaa
gaccgcagtttccgccaccgtgatcgtggagatcgcggcagccaaggtcatcgccaccat
ggtggtgaagactaa
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