Corynebacterium freiburgense: CFREI_08035
Help
Entry
CFREI_08035 CDS
T09215
Symbol
hrpB2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cfg
Corynebacterium freiburgense
Brite
KEGG Orthology (KO) [BR:
cfg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfg03019
]
CFREI_08035 (hrpB2)
Enzymes [BR:
cfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFREI_08035 (hrpB2)
Messenger RNA biogenesis [BR:
cfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFREI_08035 (hrpB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
AAA_22
HA2_N
ABC_tran
PhoH
Phage_connect_1
T2SSE
AAA_16
TsaE
AAA_23
NACHT
Motif
Other DBs
NCBI-ProteinID:
WJZ02885
LinkDB
All DBs
Position
1722475..1726383
Genome browser
AA seq
1302 aa
AA seq
DB search
MSTSAGSSPTKRELYRLIDHVSLVDARAFRRRLSKARSPRALAAIAADIHAARVALASRA
SKIPEISYPEHLPVTARRNDIAEAIRDHQVVIIAGETGSGKTTQIPKICLELGYGVWGRI
GHTQPRRLAARTVAERLAEELGQSVGESVGYAIRFDDRVSPTTAVKLMTDGILLTEMQRD
RYLYGYDTLIIDEAHERSLNIDFLLGYIKQILPKRPDLKVIITSATIDPERFAKHFADAN
GVPAPIIEVSGRTYPVEIRYRPLQQEVQGKLVDIDPLDGLCLAIEELFAEGPGDILCFFP
GERDIRDAMEIIEARKWRGVEVTPLFGRLSNEEQHRVFAPHSGRRIVLATNIAETSLTVP
GIHYVVDTGTARISRYSARTKVQRLPIEPISQASANQRSGRCGRIADGIAIRLYSEEDFL
SRPEFTDPEILRTNLASVILHMAALKLGDITEFPFVQPPDYRAIRDGLLLLHELGALEEN
TNAQEITLTDTGQTLSRIPVDPRMARMLIAAHDLGCLDAVTIIVAALTIQDVRERPLDFQ
AQADQAHARFKVEGSDFLSYVKLWDYIQKTRSELSGNAFRKRINKEFLHYMRIRDWWDLV
RQLRGITADLGWSRAEDVATEPNPDAIHQALLSGLLSHIGSRISDSKEFHGARGTKFMVF
PGSSLAKKPPQFVMAAELVETSKLWARDVAQIDPAWVEHIAAALLKHQYSEPHWSSSRTA
AMAYQKSTLYGVTIIAERRVSYHRIDAAAARDLFIRHALVEGDWNTHHSFFHKNREKLTA
AGTLENKARRRDIVVDEDTLFNFYDSRLPENITTGRHFDRWWKRHQKQNPHLLDFDPEAL
INPEAEAVSEDAFPDVWRQGSLEYELDYRFEPGHEFDGVTLRIPVPLLASVNDTDFEWLV
PGLRLELISALIRTLPKALRRSVVPAQEFAKRAIGGLHPYHGSLAEQLSDQLRAIGGSGI
QASDFRFDALPNHLRITFAAIDKRGTIIDHDKNLAALRDRQAGKIRASVSQVARSSESDV
ATQWTNETLGMIQEEIISTVDGQQVVTYPALVATPQGFSIQVLPTKAAADAAMMTATLTM
LMREITVNVKNMSNGLPLQQRVALENYPHGGVKGLVEDARVAAIRDAMLEAGGPVRSPEE
FKRLKEKVAPNVPRLVRQSVVTIAPALVDYLNLRDELSQWTGESIDDMQQQLDFLLPPHA
ISIHGIQRLQHLRRYLAAMVVRLENLDLDPDHDADLQDSITAATNYLETKLKKLPTGREK
SRAVKDIRWMIEELRVSLFAQRLGTAHPISVRRIEKAVDKLH
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttcagctggatcatcccctacaaagcgcgaactctatcgcctcatcgatcat
gtttcgcttgtcgacgcccgcgcattccgccgtcggctttccaaggcacggtcccctcgt
gcactcgcagctattgctgcggacatacatgcggcgcgggtagcgttagcgtcccgggcg
tcgaaaatcccggagatttcgtacccggaacatttgccagtgaccgcccgccggaacgat
atagctgaagcaattcgtgaccaccaagtagttattatcgccggtgaaactggttctggg
aaaacaacgcagatcccaaaaatctgtttggaacttggctatggggtttggggacgtatt
gggcacacacagcctcgacgtcttgccgcacgtaccgtcgctgaacgactcgccgaggaa
ctcggacaaagtgttggggaatccgtagggtatgcgattcgtttcgatgatcgggtctcc
cctacaacagcagtcaaacttatgaccgacggcattttgcttacggagatgcagcgggat
cgctacctttatggctatgacacgcttattatcgacgaagcacacgaacgcagtcttaat
atcgactttttgcttggatatattaaacagattttgccaaagcgcccggacttaaaggtc
attattacttcagcaacaatcgaccctgagcgttttgccaaacatttcgccgacgctaat
ggggtacccgcaccaattattgaagtttccggacggacatacccagtggaaatccgttac
cgcccactgcaacaggaagtccaaggcaaactcgtagatatcgatccgttagacggattg
tgcttggcaatcgaagaactctttgctgaagggcccggcgatattttatgcttcttcccc
ggtgaacgtgatattcgtgatgcaatggaaatcattgaagcgcgaaaatggcggggtgta
gaggtcacccctttgttcggccggttatccaatgaagagcagcacagagtattcgcacca
cattcaggtcgccgtatagtcttggctacaaatattgcagaaacatccctgactgtccct
ggcatccattatgttgtggatactggcaccgcccgaatttcacggtattcggcccgaaca
aaagtccagcgtcttccaatcgaaccgatttctcaagctagcgccaatcaacgttcgggt
cgttgtggacgtattgccgatggtatagcaatccgcttgtactccgaagaagactttctt
tctcgcccggaatttacagatccggaaatcttgcgcactaaccttgccagtgtcatatta
catatggcggcattaaaactcggggatattacggagtttccttttgtgcaacccccggac
tatcgcgcaatccgagacggattattactactccacgaactcggcgcattggaagaaaat
accaatgcccaggagattacactcactgacaccgggcaaacactctcacgaatccccgtt
gacccacgcatggctagaatgctaattgccgcacatgatctggggtgtttagatgcggta
acgattatcgtggctgcactaactattcaagatgttcgggaacgtccactagatttccag
gcgcaagcagatcaagctcatgcccgatttaaggtagaaggcagtgatttcctctcctat
gtaaagctatgggattatatccagaaaacacgtagtgagctttctggaaatgccttccga
aagcgcatcaataaggaatttctgcactatatgcgaattcgggattggtgggatttagtt
cgtcaacttcgcggaattactgcagatcttgggtggagccgcgctgaagatgtagctacc
gagccaaatccggatgctattcaccaggctctactttctggattgctttcgcatattggt
tcacggatatccgattcgaaagagtttcacggggcccgcggcacaaaattcatggtattc
cccggatcgagccttgctaaaaaaccaccgcaattcgttatggcggcggaacttgtggag
acgtcaaaactctgggcacgtgatgtggcacaaatcgaccccgcatgggtagaacatatt
gccgccgcactgctcaaacaccagtactcggaaccgcactggtcatcgtcccggaccgcc
gcaatggcataccaaaagtcaacgctctacggcgttaccattattgccgagcgcagggtt
tcatatcaccgtatcgacgccgcggcagcccgcgatctatttatccgtcatgcccttgtg
gagggtgattggaatacgcatcattcgtttttccacaaaaatcgggaaaaactcaccgcc
gcaggaaccctggaaaataaggcacgacgccgcgatattgtggtcgatgaagacacgctt
tttaatttctacgatagccgtctacctgaaaatatcaccactggccgccacttcgatcgc
tggtggaaacgacaccaaaaacaaaacccgcatcttttggatttcgaccccgaagccctt
attaacccagaagccgaagccgtttccgaagatgcttttcctgatgtatggcgacaaggc
agtctggaatatgagctcgactaccgctttgaaccgggccatgaattcgacggagttaca
ttacgaatacctgtacccttactcgccagtgtcaacgatacagatttcgaatggctcgtc
cctggactccgacttgaattaatctccgcacttattcgtaccctccccaaagcactccgc
cgatcggtagtgcccgcacaagaattcgccaaacgcgccattgggggactccatccatat
catggttcactggccgaacaactctccgatcaactccgtgccattggtggatccggtatc
caggcatccgacttccgtttcgacgccctccccaaccacctgcgtattaccttcgccgca
atcgataaacgcgggacgataatcgaccacgataaaaacctggctgcactccgcgaccga
caagcaggcaaaatccgggcctccgtaagccaagtagcacgctccagcgaaagcgacgtc
gcaacgcagtggaccaatgaaaccttgggcatgatccaagaggaaatcatttccaccgtc
gacggccagcaagtagtcacctaccccgcgctggtagctaccccacaaggtttctcgata
caagtccttcccacaaaggcggctgccgacgccgcgatgatgaccgcaactcttaccatg
ctgatgcgcgaaatcaccgtcaatgtgaaaaatatgtcgaatggactgccattgcagcag
cgcgtagccttagaaaattacccccatggaggggttaaaggattggttgaagatgcccgc
gtagcagcgattcgtgacgcaatgctcgaagctggcggaccggtgcgaagccccgaagaa
ttcaaacgtttgaaagaaaaagtcgcaccgaatgtgcctcggctagtccggcagagtgtg
gtaacaatcgcccctgcgctggtagattacctaaatctccgtgatgagctttcccaatgg
actggcgaatccattgacgatatgcaacaacaacttgacttccttttgccaccacatgcg
ataagcatccacggtatccaacgcctccaacacctacgccgctacctcgctgcaatggtc
gttcgcctagaaaacctcgaccttgatcccgatcatgatgccgaccttcaggattccata
acagcagccaccaattacctagaaacgaaattaaagaaactccccacagggcgtgagaaa
agccgtgcagtaaaagatattcgatggatgattgaagaactccgcgtcagcctatttgcc
caacgactcggtaccgcacaccccatttccgtacggagaatcgaaaaagcagtagataag
ctgcattaa
DBGET
integrated database retrieval system
