Caulobacter flavus: C1707_17005
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Entry
C1707_17005 CDS
T05702
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cfh
Caulobacter flavus
Pathway
cfh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1707_17005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfh03019
]
C1707_17005
Messenger RNA biogenesis [BR:
cfh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1707_17005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AYV47818
UniProt:
A0A2N5CUH3
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All DBs
Position
3731883..3733562
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AA seq
559 aa
AA seq
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MKKQTNDELVFLPLGGSNEIGMNFNLYGYGPADDRKWIVVDLGVTFGDQTTPGVEIILPD
PEYIVPYADDILGIVLTHAHEDHLGAVAWLWPQLKAPVYATPFTAFLLREKLRDANLLDE
VEIIEVPLSGAFDLGPFHLEMVTLTHSIPEPNGLAIKTPLGTVLHTGDWKIDPDPQLGAA
TDVDALRRLGDEGVLAMVCDSTNVFVEGESGSEADVRVEMNKLIAGLTGKIAVACFASNV
ARMDTVIRAAQAAGRKVCLAGRSMHRMAAAARSVGLLEGLEPFVTDDQAKHMPENEILYL
CTGSQGEARAALARIAEGNHPHVKLSSGDHVVFSSRVIPGNEIPIRNLQNKLADRGVRLH
TERDTPGIHVSGHPCRDELKQMYQWARPQIAVPTHGERRHLLEHAAFAKDLQVPHAVSPR
NGDMVRLAPGHPEIIDEVPAGRLYVDGGVVTPENGEALRERRHAAFNGVLAVSIVLDGRN
KIVSGPQVRGLGLAGDEEYPLDEALDDLAEEAEEAFKRLSGDDREIDETIENAISRAVKK
AAFRIWERKPVVETTVLRL
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagcaaaccaacgacgagctcgtcttcctgccgctgggcgggtcgaacgagatc
ggcatgaacttcaacctgtacggctacgggcccgccgacgaccgcaagtggatcgtcgtc
gacctcggcgtcaccttcggcgatcagacgacgccgggcgtcgagatcatcctgcccgac
cccgagtacatcgtgccctatgccgacgacattctcggcatcgtcctgacccacgcgcac
gaagaccacctgggcgccgtcgcctggctgtggccgcagctgaaggcgccggtctacgcc
acgcccttcaccgcgttcctgctgcgcgagaagctgcgcgacgccaacctgctggacgag
gtcgagatcatcgaggtcccgctgagcggcgccttcgacctcggccccttccacctggaa
atggtcaccctgacgcactcgatccccgagcccaacggcctggcgatcaagacccctctg
ggcaccgtactgcacaccggcgactggaagatcgaccccgatccccagctgggcgcggcc
accgacgtcgacgcgctgcgccgcctgggcgacgagggcgtgctggccatggtctgcgac
agcaccaacgtcttcgtcgagggcgagtcgggctcggaagcggacgtccgcgtcgagatg
aacaagctgatcgccggcctgaccggcaagatcgccgtggcctgtttcgcctccaacgtg
gcgcggatggacaccgtgatccgcgccgcccaggccgccggccgcaaggtctgcctggcc
gggcgctcgatgcatcgcatggccgcggccgcccgctcggtgggcctgctggaggggctg
gagccgttcgtcaccgacgaccaggccaagcacatgcccgagaacgagatcctctatctc
tgcaccggcagccagggcgaggcgagggcggccctggcgcgcatcgccgagggcaaccac
ccgcacgtcaagctgtcgtcgggagaccacgtggtgttcagctcgcgcgtgatcccgggc
aacgagatcccgatccgcaacctgcagaacaagctggccgaccgcggcgtgcgcctgcac
accgagcgcgacacccccggcatccacgtctcgggccacccgtgccgcgacgagctgaag
cagatgtaccagtgggcccggccgcagatcgccgtgccgacccacggcgagcgccgccac
ctgctcgagcacgccgccttcgccaaggacctgcaggtcccgcacgccgtcagcccgcgc
aacggcgacatggtgcgcctggcgcccggtcacccggagatcatcgacgaggtgccggcc
ggtcgcctgtacgtggacggcggcgtcgtgacgcccgagaacggcgaggccctgcgcgag
cgtcgccacgcagcgttcaacggcgtgctggccgtgtcgatcgtgctggacggtcgcaac
aagatcgtctcgggcccgcaggtccggggcctgggcctggccggcgacgaggaatacccc
ctcgacgaggcgctggacgatctggctgaagaggccgaagaggccttcaagcgcctgtcg
ggcgacgatcgcgagatcgacgagaccatcgagaacgccatctcgcgggcggtgaagaag
gccgccttccgcatctgggaacgcaagccggtcgtggagacgaccgtcctgcgtctctag
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