Caulobacter flavus: C1707_21275
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Entry
C1707_21275 CDS
T05702
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfh
Caulobacter flavus
Pathway
cfh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1707_21275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfh03400
]
C1707_21275
Enzymes [BR:
cfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1707_21275
DNA repair and recombination proteins [BR:
cfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1707_21275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
AAA_30
SecA_DEAD
MFD_D3
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AYV48588
UniProt:
A0A2N5CP33
LinkDB
All DBs
Position
4666079..4669429
Genome browser
AA seq
1116 aa
AA seq
DB search
MSQSELSPTSPVGETLTPGAAASPRRTPSSQPPAAAVAAALAATPATGVVVHLASSDRRA
DEIGRALTAFAAERPVLVLPPWDCLPYDRASPSRDVMGRRARVVASLADGARAGAIVVTS
PEALVQRLPPGHVVAEAVMTLRTGDPLDRDALARFAARTGYVTDERIDEPGEIALLGEVV
DVFPPDAAKPARIVVEETGVIAEIRIYDPLTQRSEIEVDSVSLGPASEWILPEAAAPEEP
PETWPQRPPGVEHGLADHYDDLTSLFDLLPDAKLSVDPKAPDRLPEVEDHVLDAHAAHLA
LGGKAEPTPSPPAALYLLGDDLRAAIKRWKALALPLDGVEAVASFAGGRSPGRAFSDFVE
AQQAAGRRVVLTGLRHELRPLTKALARGLDLKPQPADGWYAARSAEPGAVSSLEADLEAG
FVDPDAALAVVAAADVLGGRMASRASSATDLVLEPDLRIGDVVLHEDHGVGVLRDLSTVE
IEGVARDVLHLEYYGGDNLLAPVEEIGRIWRYGGEAAGVTLDRLKGEAWARRRAEVSRHV
DDAARRLVALATERQARTCEPIVPPKVAYARFAARFAYPETPDQAAAIEAVLGDLASGRP
MDRLVCGDVGYGKTEVALRAAAAVALSGRQVALAAPTTVLARQHVETFRRRFQGTGIGVA
HLSRLVTPAEARAVRQGLDSGEIKIVVGTQALAGKDMAFDDLALLIIDEEQKFGAALKAQ
LRGLCADGHVLTLTATPIPRTLQAAMVGIQDVSVIASPPARRRPVRTFVAPFDAASLRTA
LMREKRRGGQSFLVVPRIDDVGPIGERLAKVVPELSVRVAHGDVASDAMDAVMVGFADGD
GDVLLATNIIESGLDVPRANTMIVWRPDRFGLSQLHQLRGRVGRGRIQGVACLLTDPDSE
LSEATRARLSTLEAFDRLGSGLAISARDLDLRGGGDLVGEDQAGHVKMIGASLYQRLLAR
AVAVARGEADADAQTPNLVLGEIGSLPPDYVPDPVVRIGLYARLARIDDPAAIDAFEEEL
EDRFGSPPDAVGILLAKARLTALARAAGVVEVRAGPKGVVLVVPPKVAAEAAKRLTRVVP
EVSVDGGRIIVASPSEDDTTGRTLVERLVSALAAGR
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgagccagtctgagctttcacccacctccccggtcggcgagaccctgacgcccggtgcg
gccgcgtcgccgcgccggacgcccagcagtcaaccgcctgcggccgcggtggccgcagcc
ctggcggcgaccccggcgacgggcgtcgtcgtccacctggcctccagcgaccggcgtgct
gacgagatcggccgcgccctgaccgccttcgcagccgagcggcccgttctggtcctgcct
ccatgggactgcctgccctacgaccgggcgtcgccgtcgcgcgacgtgatgggtcggcgc
gcgcgggtcgtcgccagcctggcggacggggcacgggccggcgcgattgtcgtgacctcg
cccgaggcgctggtccaacgcctgccgcctggtcacgtcgtggcggaggccgtcatgacg
ctgcggaccggcgatccgctcgaccgcgacgccctggcgcgcttcgccgcgcggaccggc
tacgtgaccgacgaacgcatcgacgagccgggtgagatcgccctgctcggcgaggtcgtc
gatgtgttcccgcctgacgcggccaaacccgcacgcatcgttgtcgaggagaccggggtc
atcgccgagatccggatctatgatccgctgacccagcgctccgaaatcgaggtcgacagc
gtctcgttgggcccggccagcgagtggatcctgcccgaagcggccgcgcccgaagagccg
ccggagacctggccgcagcgcccgccgggcgtcgagcacggcctcgcagaccactacgac
gacctgacaagcctcttcgaccttctgcccgacgcgaaactctccgtggatcccaaggct
ccggaccggctccccgaggttgaagaccacgtgctggacgcccacgccgctcacctggcg
ttgggcggcaaggcggagccgacgccctccccgcccgcggctctctatctgctgggcgac
gacctgcgggccgcgatcaagaggtggaaggcgctggccctgccgctcgacggcgtcgag
gccgtcgccagcttcgccggcggccgcagcccgggacgggcgttcagcgacttcgtcgag
gctcagcaagcggccggccgccgggtcgtgctcacgggcctgcgccacgaacttcggcct
ctgaccaaggccttggcccgcggcctcgacctgaagccccagcccgccgatggctggtat
gctgcccggtcggctgaacccggcgcggtatccagcctggaggccgatcttgaggccggc
ttcgtcgatcccgacgccgccctggcggtcgtcgccgcagcggacgtcctcggcggccgg
atggcctcgcgcgcgtcctcggcgaccgatctcgtcctcgaacccgacctgcggatcggc
gacgtggtgctgcacgaggaccatggcgtcggcgtcctgcgcgacctgtcgaccgtcgag
atcgagggggtggcgcgcgacgtgctgcatctagaatattacggcggcgacaacctgctc
gcccctgtcgaggagatcggccggatctggcgctacggcggcgaggccgctggggtaacg
ctcgatcggctcaagggcgaggcctgggcgcgtcgccgggccgaggtcagccgacacgtc
gacgacgccgcccgccggctcgtggctctcgcgaccgagcgccaggcgcggacctgcgaa
ccgatcgtcccgccgaaggtcgcctacgcccgcttcgccgcgcgcttcgcctacccggag
acgccggaccaggcggcggcgatcgaggccgtgctgggcgacctcgcctctgggcgcccg
atggaccgactggtctgcggcgacgtcggctacggcaagaccgaggtggccctgcgcgcg
gccgcggccgtggccctgagcggccgccaggtcgcgctcgccgcgccgacgaccgtcctg
gcccgccagcacgtcgagaccttcaggcgccgcttccaaggcacggggatcggcgtcgcg
cacctctcgcggctggtcacgccagccgaggcccgagccgtgcgccaaggtcttgacagc
ggcgagatcaagatcgtggtcggcacccaggccctggcgggcaaggatatggccttcgat
gacctggcgctgctgatcatcgacgaagagcagaagttcggcgcagccttgaaagcccag
cttcgcggcttgtgcgccgacggtcacgttctcaccctgacggccacgccgattccccgc
acgctgcaggcggccatggtcgggatccaggacgtcagcgtgatcgccagcccgcccgcc
cgtcgtcggccggtccggaccttcgtggcgccgttcgacgcggccagcctgcgcacggcc
ttgatgcgagaaaagcgccggggcggtcagagcttcctggtcgtcccacgcatcgacgac
gttggcccgatcggcgagcgcctggccaaggtcgttccggagctttcggtgcgtgtcgcg
cacggcgacgtggcgtccgacgccatggacgcggtgatggtcggtttcgccgacggcgac
ggcgacgtcctgctggcgaccaatatcatcgagagcggcttggacgtgccgcgcgccaac
accatgatcgtctggcggccggatcggttcgggctctcccagctgcaccagttgcgcggg
cgcgtcggccgcggccggatccagggcgtggcctgcctgctgaccgatcccgacagcgag
ctttcggaggcgacacgcgcacgcctgtcgaccctggaggcgttcgaccggctgggctcg
ggcctggcgatcagcgcgcgggaccttgatctgcgcggcgggggcgatctcgtgggcgaa
gatcaggccggtcacgtcaagatgatcggcgcgtcgctctatcaacgcctgctggctcga
gccgtcgccgtggcgcgaggcgaggcagacgccgacgcccagacgcccaacctggtgctt
ggagaaattggaagccttccgcccgactatgttcccgaccccgtggttcggatcggtctc
tacgcgcggctggctcggatcgacgatcccgccgccatcgacgccttcgaagaagagctg
gaagaccgcttcggctctccgcccgacgccgtgggtatcctcctggccaaggcgagactg
acagccctggcacgcgccgcgggggtcgtcgaagtgcgcgccggtcccaagggcgtggtg
ctggtcgtcccgccgaaggtggcggcggaggcggccaagcgattgacgcgtgtcgtgccc
gaggtcagcgtcgacggcggccggatcatcgtagcctcgccgagcgaagacgacacgacg
ggccgcacactggtcgagcggctggtgtccgccctcgccgcgggccggtaa
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