Cellulomonas fimi: Celf_3261
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Entry
Celf_3261 CDS
T01490
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cfi
Cellulomonas fimi
Pathway
cfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Celf_3261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfi03019
]
Celf_3261
03400 DNA repair and recombination proteins [BR:
cfi03400
]
Celf_3261
Enzymes [BR:
cfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Celf_3261
Messenger RNA biogenesis [BR:
cfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Celf_3261
DNA repair and recombination proteins [BR:
cfi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Celf_3261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AEE47375
UniProt:
F4H0K6
LinkDB
All DBs
Position
3643215..3645296
Genome browser
AA seq
693 aa
AA seq
DB search
MPPGPARPAPRAATPAPWADDVPPFDEPPFDLDEPPYDPAYDEPPFDPAYDAGPDERTIR
DEAAHGAPVPGRVRPRAVAEPDDGPRPTPQEVLQRVWGYDAFRGDQAEIIDTVVAGGDAL
VLMPTGGGKSLCYQVPALVRPGTGVVVSPLIALMQDQVDALSALGVRAGFLNSTQQPHER
RAVEQAFLDGELDLLYLAPERLRVPDTIDLLDRGRIALFAIDEAHCVSQWGHDFRPDYLQ
LSMVHERWPDVPRIALTATATAATHAEIAQRLQLEDAKHFVASFDRPNIQYRIAPKDNPR
AQLLELLRTEHDGDAGIVYCLSRASVEQTAEHLVANGIPALPYHAGLDRLVRARNQARFL
REDGIVMVATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLA
DVVQQRRMIDTSDGDAAHRRRLTQHLDAMLALCETVSCRRVQLLNYFGQSSEPCGNCDTC
LTPPESWDGTVAAQKLLSTIVRLDQRNQRYGVGHLVDILRGKTTPRVQQLGHSSLSTFGV
GTDLSDGEWRGAVRQLLAMELLAVDTDGYGTLRLSPASADVLRGEREVRLRREPERTGRS
RGSSSRERRATVAADLSDDATERFERLRAWRAGAAKEQGVPAYVVFHDATLREIATQVPD
SLAALGTISGVGATKLDRYGEGVLAALSGEAPE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgccccccggacccgcccgccccgcgccccgcgccgccacgccggcgccgtgggcggac
gacgtcccgccgttcgacgagccgccgttcgacctcgacgagccgccgtacgacccggcc
tacgacgagccgccgttcgaccccgcctacgacgcgggccccgacgagcggacgatccgt
gacgaggccgcgcacggtgcgcccgtccccggccgcgtgcgcccgcgggcggtcgcggag
cccgacgacggaccgcgtccgacgccccaggaggtgctccagcgcgtctggggctacgac
gcgttccgcggcgaccaggccgagatcatcgacaccgtcgtcgcgggcggcgacgcgctc
gtcctcatgccgaccggtggcggcaagtcgctctgctaccaggtgccggccctcgtgcgg
cccggcacgggcgtcgtggtctcgccgctcatcgccctcatgcaggaccaggtcgacgcg
ctgtccgcgctgggtgtgcgcgccgggttcctcaactccacgcagcagccccacgagcgc
cgcgccgtggagcaggcgttcctcgacggcgagctcgacctgctctacctcgcgcccgag
cgcctgcgcgtgcctgacaccatcgacctgctcgaccgcggccgcatcgcgctgttcgcg
atcgacgaggcccactgcgtgtcccagtgggggcacgacttccggcccgactacctgcag
ctgtcgatggtgcacgagcgctggcccgatgtgccgcgcatcgccctcaccgcgacggcc
accgccgcgacccatgcggagatcgcccagcggctgcagctcgaggacgcgaagcacttc
gtcgcgagcttcgaccggcccaacatccagtaccggatcgcccccaaggacaacccgcgc
gcccagctgctcgagctgctgcgcaccgagcacgacggcgacgccgggatcgtctactgc
ctgtcgcgcgcgtccgtcgagcagaccgccgagcacctcgtcgccaacggcatccccgcg
ctgccgtaccacgcaggcctcgaccgcctcgtgcgcgcacgcaaccaggcccggttcctg
cgcgaggacggcatcgtcatggtcgcgaccatcgcgttcggcatgggcatcgacaagccc
gacgtgcggttcgtcgcgcacctcgacctgcccaagtccgtcgagggctactaccaggag
acggggcgtgccggccgtgacggcctgccgtccaccgcgtggctcgcctacgggctcgcc
gacgtcgtgcagcagcggcgcatgatcgacacctccgacggcgacgccgcgcaccgccgg
cggctcacccagcacctcgacgcgatgctcgcgctctgcgagacggtgtcctgccggcgc
gtgcagctgctcaactacttcgggcagagcagcgagccctgcggcaactgcgacacctgc
ctgacaccgcccgagtcctgggacgggaccgtcgccgcgcagaagctcctgtcgaccatc
gtccggctcgaccagcgcaaccagcggtacggcgtcgggcacctcgtcgacatcctgcgc
gggaagacgaccccgcgcgtccagcagctcgggcactcctcgctcagcaccttcggggtc
ggcaccgacctgtccgacggcgagtggcgcggcgcggtccgccagctcctcgcgatggag
ctcctcgccgtcgacaccgacgggtacggcaccctgcgcctgtcccccgcctccgccgac
gtgctgcgcggcgagcgggaggtgcggctgaggcgcgagcccgagcggaccggacggtcc
cgggggtcgtcgtcgcgcgagcgccgcgcgaccgtcgccgccgacctgtccgacgacgcg
accgagcggttcgagcggctccgggcctggcgcgcgggcgccgcgaaggagcagggcgtc
cccgcctacgtcgtgttccacgacgcgaccctgcgcgagatcgcgacgcaggtgcccgac
tccctcgccgctctcggcacgatcagcggcgtcggcgccaccaagctcgaccgctacggc
gagggcgtgctcgcggcgctgtccggcgaggcaccggagtga
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