Cellulomonas fimi: Celf_3714
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Entry
Celf_3714 CDS
T01490
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cfi
Cellulomonas fimi
Brite
KEGG Orthology (KO) [BR:
cfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfi03019
]
Celf_3714
Enzymes [BR:
cfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Celf_3714
Messenger RNA biogenesis [BR:
cfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Celf_3714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
NACHT
SRP54
nSTAND3
T2SSE
PhoH
Motif
Other DBs
NCBI-ProteinID:
AEE47820
UniProt:
F4H4M5
LinkDB
All DBs
Position
4152549..4157129
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AA seq
1526 aa
AA seq
DB search
MTTSEPSTGADRPAGPRRSGGRGGRGPRRRGQREAQRDPQRDQRDGQSGTQPDGRRDPHR
DDQRGRRRDARDPRRDDERAAARRARAAAVREAVVVPAIVYPENLPVSARRDEIAAAIRD
HQVVVVAGETGSGKTTQIPKIALDLGRGRAGQIGHTQPRRIAARSVAERIAEEVGTPLGQ
LVGYQVRFTDTSSDETLVKVMTDGILLAQIQRDPMLWSYDTLIIDEAHERSLNIDFILGY
LTRLLPQRPDLKVVITSATIDSARFARHFAGPATPEHPEGVPAPVVEVSGRTYPVEIRYR
PLSPDVEAPDEDAGRRPRAKATEDRDLMTAITEAVDELSAEGPGDILVFLSGEREIRDAE
DALRTSLGARVTDPRHPQPVELLPLYSRLSAAEQHRVFEQHAGRRVVLSTNVAETSLTVP
GIRYVVDPGTARISRWSKATKVQRLPIEPVSQASANQRSGRCGRVADGIAIRLYSQDDFA
SRPMYTEPEILRTSLASVILQMIAVGVAASPDDVTDFPFVDPPDVRAVRDGVQLLTELGA
LETVPVEPVDGSGRPTSVTRLTDTGRALAQLPMDPRLARMIVEGGRRGVAREVMVIAAAL
SIQDPRERPAEERDRADQLHGRFADPTSDLLAYLNLWQYLREQQRELSGNAFRRMCRSEH
LNYLRIREWQDVVTQLRELAKPLGIHVSPLRPGSGPAPGGETATSPGDTGASASDGRGPD
DTARGALRLEWDADRIHVSVLSGLLSHIGMQEATEVAAPARGPAAGRGRRPDRRARNEYL
GARGARFAIFPGSGLAKRPPAWVMAAELVETSRLWARDAARIQPEWAEEVGAHLVRRTYS
EPAWSSKQGAATAFEKVLLYGVPIVAQRRVLYAKVDAEHARELFVRHALVQGEWTTHHQF
FHENRRLLAEAEGLEARARRRDLVVDDDVLFDFYDERIPSDVVSARHFDQWWKGARRRDP
DLLTFTRELLVADDAEAIDESAFPSRWPQGDLRLPLTYQFQPGTEADGVTVHVPLTALAR
LTPDGFDWMVPGLREELVTATIRALPKPVRVQLVPAPDVARSVEAWLREHTASWEDTVRA
GDAAPSFRELFRQAVRAVRDVDVPDDAFDDEKLPPHLRMTFRVVGDRGGVVDEGKDLLTL
QRRLASRTQQAVDAAVRTAVRAAMEEARASAAPGTSGDAGAPGGARAPGGEGSAARARGA
GPAAAPAAGVPAVPGPGPSATAAPPSLERTGLRTWPDDLPGGALPEVLEARAAGVVVRAY
PTLVDEVTSVAVRTLADAAAVPSAARRGLRRLLLLDVGLATARITTRWSGTQALTLAASP
YPSTDALVRDVQLAAIDRLTAQHLGTRTAADVRDADAYAALRTAVRDGLEDAVHAVVTDL
VAVLGAWRELEGDLRSSASLALLATVQDVREQSAALVHDGFVSEVGAVRLPQLTRYLRAA
RHRLGKAAENPQRDGDLAWQVHDVEDLYDDAVTAARAAAPDATREAALDEVRWLLQELRV
SLFAQQLGTPVPVSPTRIRKALAALR
NT seq
4581 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccagcgagccgtcgaccggcgccgaccgcccggcgggcccccgccgcagcggc
gggcgcggcggtcgtggtccccgccgccggggtcagcgggaggcgcagcgcgacccccag
cgcgaccagcgcgacggccagagcggcacgcagccggacggccgccgtgacccgcaccgc
gacgaccagcgcggacgccgtcgtgacgctcgcgacccccggcgcgacgacgagcgcgcg
gccgcgcgccgggcccgcgccgccgcggtccgcgaggccgtcgtggtccccgcgatcgtc
tacccggagaacctgccggtcagcgcgcggcgcgacgagatcgcggcggcgatccgcgac
caccaggtcgtcgtcgtcgcgggcgagacggggtccggcaagacgacgcagatcccgaag
atcgcgctcgacctcggccgcgggcgcgcggggcagatcgggcacacgcagccgcgccgg
atcgcggcccggtcggtcgcggagcgcatcgcggaagaggtcggcacgccgctcgggcag
ctcgtcggctaccaggtgcggttcacggacacctcgtccgacgagacgctcgtcaaggtc
atgacggacggcatcctgctggcgcagatccagcgcgacccgatgctctggtcgtacgac
acgctcatcatcgacgaggcgcacgagcgttcgctcaacatcgacttcatcctcggctac
ctcacacggctgctgccgcagcggccggacctcaaggtcgtcatcacgtcggcgacgatc
gactccgcgcggttcgcgcggcacttcgccggccctgcgacacccgagcaccccgagggc
gttccggcgcccgtcgtcgaggtcagcggccgcacgtaccccgtcgagatccgctaccgg
ccgctgtcgccggacgtcgaggcgcccgacgaggacgcgggccggcgtccgcgcgcgaag
gccaccgaggaccgcgacctcatgacggccatcaccgaggcggtcgacgagctgtccgcg
gaggggccgggcgacatcctcgtcttcctgtccggcgagcgggagatccgggacgcggag
gacgcgctgcgcacgtcgctgggcgcccgcgtcacggacccgcggcacccgcagcccgtc
gagctgctgccgctgtacagccggctgtccgcggccgagcagcaccgggtgttcgagcag
cacgccgggcggcgcgtggtgctgtcgaccaacgtcgcggagacgtcgctgaccgtgccc
ggcatccggtacgtcgtcgacccgggcacggcccgcatctcgcggtggtccaaggcgacg
aaggtgcagcggctgccgatcgagccggtctcgcaggcgtcggcgaaccagcggtcgggg
cggtgcgggcgcgtcgcggacggcatcgcgatccggctgtactcccaggacgacttcgcg
tcgcggccgatgtacaccgagccggagatcctgcgcacgtcgctcgcgtcggtgatcctg
cagatgatcgccgtgggggtcgcggcgtcgcccgacgacgtcaccgacttccccttcgtc
gacccgcccgacgtgcgggccgtgcgggacggcgtgcagctgctgaccgagctcggggcg
ctggagacggtgccggtcgaacccgtcgacggctcgggccggccgacgagcgtcacgcgg
ctcaccgacaccgggcgcgctctcgcgcagctgccgatggacccgcggctcgcgcggatg
atcgtcgagggcgggcgtcgcggggtcgcgcgcgaggtcatggtgatcgccgccgcgctg
tcgatccaggacccgcgcgagcgtccggccgaggagcgcgaccgcgccgaccagctgcac
ggccggttcgccgacccgacgtcggacctgctcgcgtacctcaacctgtggcagtacctg
cgcgagcagcagcgcgagctgtcgggcaacgcgttccgccggatgtgccggtcggagcac
ctcaactacctgcgcatccgcgagtggcaggacgtcgtcacgcagctgcgcgagctggcc
aagccgctcggcatccacgtctccccgctgcgcccgggatccggtcccgcgcccggcggc
gagaccgcgacgtcgccaggcgacaccggcgcctccgcctcggacggtcgcggtcccgac
gacacggcccggggggcgctgcggctcgagtgggacgcggaccggatccacgtgagcgtg
ctgtcggggctgctgtcgcacatcgggatgcaggaggcgacggaggtcgccgcaccggcc
cggggacccgctgccggccgggggcggcggcccgaccggcgcgcgcgcaacgagtacctc
ggcgcgcgcggggcgcggttcgcgatcttccccgggtccggtctcgcgaagcggccgccg
gcgtgggtcatggccgccgagctcgtcgagacgtcccgcctgtgggcgcgcgacgcggcc
cgcatccagcccgagtgggccgaggaggtcggtgcccacctggtcaggcgcacgtactcc
gagccggcgtggtcgtccaagcagggcgccgcgaccgcgttcgagaaggtcctgctgtac
ggcgtgccgatcgtcgcgcagcggcgcgtcctgtacgccaaggtcgacgccgagcacgcg
cgcgagctgttcgtgcggcacgcgctcgtgcagggcgagtggacgacccaccaccagttc
ttccacgagaaccgccgcctgctcgccgaggccgagggcctggaggcgcgcgcccgccgc
cgcgacctcgtcgtcgacgacgacgtgctgttcgacttctacgacgagcggatcccgtcc
gacgtcgtctccgcccggcacttcgaccagtggtggaagggcgcccggcgacgcgacccc
gacctgctgacgttcacgcgcgagctgctcgtcgccgacgacgccgaggcgatcgacgag
tccgcgttcccgtcccgctggccgcagggcgacctgcgcctgccgctgacgtaccagttc
cagcccggcaccgaggccgacggcgtcacggtgcacgtccccctcacggcgctggcccgg
ctgacccccgacgggttcgactggatggtgcccggcctgcgcgaggagctcgtcaccgcg
accatccgcgcgctgcccaagccggtccgcgtgcagctggtcccggcgcccgacgtcgcg
cggtccgtcgaggcgtggctgcgcgagcacaccgcgtcgtgggaggacaccgtgcgggcc
ggcgacgccgccccgtcgttccgtgagctgttccggcaggccgtgcgggccgtgcgcgac
gtcgacgtgcccgacgacgcgttcgacgacgagaagctgccgccgcacctgcggatgacg
ttccgcgtcgtcggcgaccgcgggggcgtcgtggacgagggcaaggacctgctgacgctc
cagcggcggctcgcgtcacgcacccagcaggcggtcgacgccgccgtccggacggcggtg
cgcgcggcgatggaggaggcacgcgcgtccgcggctcccgggacgtccggcgacgcgggc
gcgccgggtggcgcgcgcgctccgggtggcgaggggtcggctgcgcgtgcgcgtggggcg
ggaccggcagcggctccggccgcgggcgtccccgccgtgcccggccctggcccgtccgcc
acggcggcaccgccgtcgctcgaacgcacgggcctgcggacctggcccgacgacctgccg
ggcggcgcgctccccgaggtgctcgaggcgcgggccgcgggcgtcgtcgtgcgcgcctac
ccgacgctggtcgacgaggtgacgtccgtcgcggtgcgcacgctcgcggacgccgcggcg
gtgccgtcggcggcccgccggggcctgcgccggctgctgctgctcgacgtcggcctcgcg
acggcccgcatcacgacgcgctggtcggggacgcaggcgctcacgctcgctgcgagcccg
tacccgagcacggacgcgctggtcagggacgtgcagctcgccgcgatcgaccgtctgacg
gcgcagcacctcggcacccgcaccgccgccgacgtgcgcgacgccgacgcgtacgccgcc
ctgcgcaccgccgtccgcgacgggctggaggacgcggtccacgcggtcgtcacggacctc
gtcgcggtgctgggcgcgtggcgggagctcgagggcgacctgcgctcgtcggccagcctc
gcgctgctcgcgacggtgcaggacgtgcgcgagcagtccgccgcgctcgtgcacgacggg
ttcgtctccgaggtcggcgcggtccggctgccgcagctcacgcggtacctgcgcgcggcg
cggcaccggctcggcaaggccgcggagaacccgcagcgtgacggcgacctcgcgtggcag
gtgcacgacgtcgaggacctgtacgacgacgcggtgaccgcggcccgcgcggcggccccc
gacgcgacgcgcgaggccgcgctcgacgaggtccgctggctgctgcaggagctgcgcgtc
agcctgttcgcgcagcagctcggcaccccggtccccgtgagcccgacccgcatccgcaag
gcgctggccgcgctgcgctga
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