Chitinophaga filiformis: MYF79_02120
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Entry
MYF79_02120 CDS
T08225
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfil
Chitinophaga filiformis
Pathway
cfil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MYF79_02120 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfil03400
]
MYF79_02120 (mfd)
Enzymes [BR:
cfil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MYF79_02120 (mfd)
DNA repair and recombination proteins [BR:
cfil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MYF79_02120 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
DUF1615
Membrane_bind
DUF2482
Motif
Other DBs
NCBI-ProteinID:
UPK70087
LinkDB
All DBs
Position
complement(504098..507472)
Genome browser
AA seq
1124 aa
AA seq
DB search
MNIQAVLQLYQRDSRLQQLVKGIHLSDPQYFQLTGLTGSATTFIAAGAWELANSVNHLFI
LNDKEEAAYFHNDLESLSQALDIFYFPDSFKKAGYFNEINSSHSMLRTEALMKFSGPAIH
KKILVTYPEALWEKVAASVAFSSNMVQLKVGDVLKVDALLEKLVGWGFEYTDFVYEPGQY
AVRGGILDIYSFGNEKPYRIELFGEDIDSIRLFDPETQLSERKLTQVTLIANMDTQGLNH
QKTSLLEFLPENTIVWMKDPGYIQDVVLQLEEKLDAFLQTGQSVKVGDDDKLELAESDFV
KAHPLMHELLRRHCIVFSNRQWWEETNRPFTPLNFETQEQPVFNRQFDMLIKDLSAHNKN
KYTLFIFAENARQLERLRSIFEDLKADFTFFPIPSPVSHGFIDHTLKLVCYTDHQIFQRY
HKYKVKQAYNKNKAITMKTLRELQPGDFVTHIDHGVGMYSGLQKIEVGGKMQEAIRIIYK
NNDLLYVNINSLHKISKYTGKEGVEPRVNKLGSDAWDKLKEKAKTQVKDIAKDLIKLYAV
RKAQQGFAHTMDTYLQTELEASFLYEDTPDQSKATADVKKDMESPSPMDRLVCGDVGFGK
TEIAVRAAFKSVVDGKQAAVLVPTTILAFQHYKTFAERLKDFPCTVDYLNRFKSAKEKKE
TLQKLAEGKIDIIIGTHALLGKEVKFKDLGVLVVDEEQKFGVSAKEKLKQLKVNVDTLTL
TATPIPRTLQFSLMGARDLSVINTPPPNRQPIETEVHVFDHDLIRDAIYYETERGGQVYF
VYNRVKGLGEMSSLIKGLCPDLSVATAHGQMEGHQLEEVILDFIDRKYDVLVCTNIVESG
VDIPNANTIIINNAHHFGLSDLHQLRGRVGRSNKKAFCYLLAPPMSTLPADSRKRLQTLE
QHSELGSGFQIAMRDLDIRGAGNLLGGEQSGFMAEIGFDMYQKILDEAIRELKQNEFRDL
FKEQLEEKKDFVSDCTIDTDLEILIPDSYVESIQERLNLYQELDNITLESKLQAFEAELI
DRFGPLPEPVKDLLCMIRCRWMAIKLGFEKMMLKDETLRCYFINNPDSPYFESPTFNHIL
TYLQTRVNNAKLKQVGKNFMLVADRIRSMSDLYDFLKAMEDARN
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaatatacaggctgttttacaactgtaccagcgagattcccgcctgcaacagctggtg
aaagggatacatttgtccgatccacagtattttcaattaacaggactaaccggaagtgcc
accacatttatagcagcgggagcgtgggagctggctaattccgtaaatcatcttttcatt
ctcaacgacaaagaagaggccgcctatttccataatgaccttgagtcattaagccaggcg
ctggatatcttttattttccggactccttcaagaaggccggctactttaacgagatcaac
agcagtcacagtatgctgcgtaccgaagcgctcatgaagttctccggaccagccatacat
aaaaagatcctggttacctacccggaagcgctctgggaaaaagtggccgcctctgtagcc
ttcagcagtaatatggtgcagctgaaagtaggtgatgttcttaaagtggatgcgctgctg
gaaaaacttgttggctggggttttgagtataccgactttgtgtatgagccgggacaatat
gctgttcgcggtggcatcctcgatatttattctttcggtaatgaaaaaccttaccgcata
gaactgttcggtgaagatattgactccatccgcctctttgacccggaaacacagctgagc
gaacgcaagctgacacaggtcaccctcatcgccaatatggatacacagggcctgaatcac
cagaagacctccctcctggagttcctcccggagaataccatcgtctggatgaaagacccc
ggttatatacaggacgttgtgctgcagctggaagaaaagctggatgcattcctgcaaacc
ggtcaatcagtaaaggtcggtgacgatgataaattggagctggcagaatctgatttcgta
aaagcacatccgctgatgcacgagcttttgcgcaggcattgtatcgtgttcagcaaccgt
cagtggtgggaagagacaaaccgtccctttacgccgctcaattttgaaacgcaggagcaa
cctgtttttaacaggcagtttgatatgctgatcaaagacctgtcagcacacaacaagaat
aagtatacactcttcatctttgcagagaatgcccgccagctggaaaggttgcgcagcatc
ttcgaagatctgaaggcagactttacattcttccctatcccatctcctgtcagccatggt
tttatagatcataccctgaaactggtatgttataccgatcaccagatcttccagcgttac
cataaatacaaggtaaagcaggcttataacaagaataaggcgatcaccatgaaaacgctg
cgtgaactgcagccgggcgattttgtgacgcatattgatcatggtgtcggcatgtacagt
ggcttacagaagatcgaggtaggtggtaagatgcaggaagctatccgtattatttacaag
aacaatgacctcttgtatgtaaacatcaactccctgcacaagatcagcaaatacacgggt
aaggaaggcgtggagccacgcgtgaacaaactcggcagcgatgcatgggataagctgaag
gaaaaggcgaagacgcaggtaaaagatatcgcgaaagacctgatcaaactctatgctgtc
cgtaaggcccagcagggatttgcccatacaatggatacctacctgcaaacagagctggag
gcgtccttcctgtatgaagatacgcccgaccagagcaaggccacagcagatgtgaaaaag
gatatggaatctccgtcgccgatggaccgccttgtgtgtggcgacgtaggttttggtaaa
acagagattgctgtccgtgccgcctttaaatctgttgtagatggtaaacaggctgccgta
ctggtgcctaccactatcctggcattccagcactataagacctttgcagagcgtctgaaa
gacttcccttgtactgtcgactacctgaaccgtttcaagtctgcaaaagagaaaaaagaa
acgctccagaaactcgcagaaggaaagatagacatcatcattggtacacatgcactgctg
ggtaaagaagtaaaattcaaagacctcggcgtgctggtcgtggatgaggaacagaagttc
ggtgtatctgccaaggaaaagctgaaacagctgaaagtgaatgtagatacactgacacta
acggcaacacccatcccaagaacattgcagttctcgctgatgggggccagagacttgtcc
gtgatcaatacaccgccacctaacaggcagccgatagaaacggaagtacatgtatttgac
catgacctcatccgtgatgcgatctactatgaaacagaacgtggcggccaggtatacttc
gtgtacaacagggtgaaaggtttaggcgaaatgagcagcctcataaaaggattgtgtcct
gatctttcagtagctactgcccatggacaaatggaagggcatcagctggaagaagtgatc
ctcgatttcattgacaggaagtacgatgtactggtatgtaccaatatcgtggaaagcggt
gtggacattccaaacgccaataccatcatcatcaacaatgcccatcacttcggattgagc
gatctgcatcagctacgcggacgtgtaggccgtagtaataaaaaggctttctgttacctg
ttggcgcctcctatgagcacactgccggccgatagccgcaaaagactgcagacactggag
caacacagtgaactgggcagcggcttccagatcgctatgcgcgacctggatatccgcggc
gccggtaacctgctgggaggcgaacagagcgggtttatggcagagattggatttgatatg
taccagaagatcctggatgaagctatccgtgaactgaaacaaaacgagttccgtgatctc
ttcaaggaacaactggaagagaagaaggatttcgtaagcgactgtaccatcgatacggat
ctggaaatactgatccccgacagctatgtggaaagtatacaggaacgtttgaacctctac
caggaactggataacatcaccctggaaagtaagctccaggcctttgaagcagaactgata
gaccgtttcgggccgctgcctgaacctgtaaaagacctgctctgcatgatccgttgccgc
tggatggcgatcaagctcggctttgaaaagatgatgctgaaagatgaaaccctgcgttgt
tattttatcaacaacccggattctccatacttcgaatcacctacctttaatcacatcctc
acctatctgcaaacgcgggtgaataatgcgaagctgaaacaggtaggaaagaatttcatg
ctggtggcagatcgtatacggtccatgagcgacctgtatgatttcctgaaggcaatggaa
gatgcgaggaattag
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integrated database retrieval system
