Chitinophaga filiformis: MYF79_04455
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Entry
MYF79_04455 CDS
T08225
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cfil
Chitinophaga filiformis
Pathway
cfil03420
Nucleotide excision repair
cfil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MYF79_04455
03430 Mismatch repair
MYF79_04455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfil03400
]
MYF79_04455
Enzymes [BR:
cfil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MYF79_04455
DNA repair and recombination proteins [BR:
cfil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MYF79_04455
MMR (mismatch excision repair)
Other MMR factors
MYF79_04455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
DUF3799
DUF2800
Dna2
Motif
Other DBs
NCBI-ProteinID:
UPK70546
LinkDB
All DBs
Position
complement(1060924..1064121)
Genome browser
AA seq
1065 aa
AA seq
DB search
MSRDQYQRHFREVYARLNGQQRKAVDQTEGPVMVIAGPGTGKTQILASRIGKILLDTDYL
PQNILCLTYTDAGTVAMRKRLTDFIGPDAYRVNIHTFHSFCNEVIQDNLNLFDKHHLDPV
SELEKIQLLKKLIDGFTKDNPLKRYRGDVYFDMKNLDHLFSTIKKEGWSVEYITDAISAY
IESLPGREAFIAKKTTRQFVKGDIRTDKIALEKEKMVRLQAAVEQFPVYTALMHAAGRYD
FDDMINWVIGAFETYPNLLADYREQFQYILVDEYQDTSGTQNKLVQMLTGGQESPNIFVV
GDDDQSIYRFQGASIENMAQFADTFADTLQTIVLTHNYRSVQSILDVSMSLIENNGAARL
VNQLPGLSKRLSTAASHLISLDIPPVIRHYNTPRDEMIDITRQISQLLDNGTAPGRIAVI
YRENKYGEELASYCRFRHIPFYSKRSINLFEIPFARKVLTILRYIACETDTPYSGDDLLF
SILHYDFYNIPAIEVAKISIRAAEKGYREKSSIRQYLQEWQHTRNLTLFTAAPEQALIDF
TRIIEKLIKDAHNLTLQQLFAAIINECGVLSYVMQSPEKPWLMKVLQSLFDFIKAETHRN
PDLSLVPFMDMTDLMEHNKITIPIVQVSGNENGINLLTAHGAKGLEFEYVFIAGANAHLW
EKKTRSNTGFAFPDTLFTTAVTSTDEQELRRLFYVAMTRAEKYLYISYPTFRTDGKPLEP
SLFVTEILEQHALRVEKALIPEDVLFTFEALQYTQGIAPEIARTDQQFIDNLLASFVMNV
TALNNYLDCPLGFYYKNLVRVPSGRSENTEFGSAVHYALEKLFQKMQESKQYEFPSKEEF
IRDFTWSMLRNRESFTRESFERRLEYGKDILDSYYDTYLSKWNKVVSVERNVRNVVVSGV
PLKGKIDKLEFEGKLVNVVDYKTGDYEKTIREYQKFARPDQLHPNGGDYWRQAVFYKVLL
DNYHQKNWKVVSTEFDFIEPNRQKVYHKEKVVITPEDVDLVTRQIVSAWTKIQNREFYTG
CGKKDCVWCNFVKDNKLYVALHEPEAENLMELPARLGDSTGVTAD
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgtccagagatcagtaccaacgtcatttcagggaagtctatgcccgcctgaacgggcag
cagcgcaaggccgtcgatcagacggaaggccctgtcatggtcattgccggccccggcaca
ggcaaaacacagatcctggcctccaggatcggcaaaatattgctggatactgactacctg
ccgcagaatatcctctgcctgacctatacagatgcgggaacagtggccatgcgcaaacgg
ctgacagactttatcggcccggatgcctatcgcgtcaatatccacaccttccactctttc
tgtaacgaagtgatccaggacaacctgaacctgttcgacaaacaccatctcgatccggtt
tccgaactggaaaaaatacagctgctgaaaaaactgatcgatggctttacaaaggataat
ccgctgaaacgctaccggggtgacgtgtactttgacatgaaaaacctggaccaccttttt
tctaccattaaaaaagaaggctggtctgtggaatatatcaccgacgctatctctgcctac
atcgaaagccttcccggaagggaggccttcatcgcaaagaaaacaacaaggcaattcgtc
aaaggagatatccgcacagataagatcgcccttgaaaaggaaaagatggtgcggcttcag
gctgccgtagaacaatttcctgtttatacagccctgatgcatgcagcaggccgttatgat
tttgatgatatgatcaactgggtgatcggggcatttgaaacttatcctaacctgctggca
gattaccgggaacagttccaatacatcctggtcgatgaataccaggataccagtggcact
caaaacaaactcgtgcaaatgctgacaggcggacaggaaagccccaacatctttgttgtg
ggcgatgacgaccagtctatttaccgtttccagggcgcaagtattgagaatatggcacaa
tttgcagacacctttgccgatacgctgcagaccattgttctgacacataactaccgctca
gtacaatctatccttgacgtttccatgtcgctgatagaaaacaacggagccgccaggctg
gtgaaccagttaccaggccttagcaagcgcctgagcaccgccgccagtcacctgatatcc
ctggatattcctcccgtcatccggcattacaatacaccccgggacgaaatgatcgatatt
acccggcagatctcacagttactggataatggtacagctcccggcaggatcgctgttatt
taccgggaaaataaatatggggaagaactggccagctattgccggttccggcatattcct
ttctattccaagcgaagcatcaacctgtttgaaatacccttcgcccggaaggtgctgacc
attctccgctacattgcctgtgaaacagacacgccttacagtggagatgacctcttattc
tccatcctgcattacgacttttataacattcccgccatcgaggtggccaagatcagcata
agggctgcagagaaagggtaccgggaaaaatcttccatccgccaatatctccaggaatgg
cagcatacccgcaacctgaccctgtttacagcagctcccgaacaggcgctgatcgacttt
acccgtatcatcgagaagctgataaaggatgcgcacaatctcacccttcaacagcttttt
gctgccattatcaacgaatgcggcgtgctttcttacgtgatgcagtcgccggaaaagcca
tggctcatgaaggtattgcagtccctctttgacttcataaaggccgaaacgcaccgcaat
ccggatctgagcctggtgccatttatggacatgacagacctgatggagcataataagatc
acaattcccattgtacaggtttcggggaacgaaaacgggatcaacctgctcaccgcccac
ggcgccaagggattggaatttgagtacgtattcattgccggcgccaacgctcacctgtgg
gagaaaaagaccaggagcaataccggcttcgcctttcccgatacactctttaccacagca
gtgaccagcaccgatgaacaggagctgcgcaggctgttctatgtagccatgacccgggca
gagaagtacctctatatcagttatccaacgttcagaacagacggcaaaccgctggaaccc
agcctgttcgtcacagaaatattggaacaacatgccctgcgggtggagaaggcgctgatt
ccggaggatgtcctgttcacatttgaggccctccaatatacgcagggcatagcgccggaa
atagcgcggaccgaccagcagttcatcgataatctgcttgccagctttgtgatgaatgta
actgccctcaataactacctcgactgcccactgggcttctattataaaaacctggtgagg
gtgccctccggtcgctcggaaaatactgaatttggctccgccgttcactatgcgctggaa
aagctgttccagaaaatgcaggaaagcaaacaatatgaattcccttccaaagaagaattc
atccgggactttacctggagcatgttacgcaaccgggaaagctttacccgggaatctttt
gaaagaaggctggaatacggaaaagacatcctcgacagttattacgacacttacttgtca
aaatggaacaaggtggtcagcgtggaacggaacgtccggaatgtagtggtcagcggtgta
cccctgaaaggcaagatcgataagctggaatttgagggcaagctggtgaatgtggtggac
tacaagaccggcgattatgaaaagaccatcagggaataccagaaatttgcccgccccgat
cagctgcatcccaatggaggagattattggcggcaggccgtattttataaggtcctcctc
gataattaccaccagaagaactggaaagtggtcagtactgagtttgactttattgagccg
aacaggcagaaagtatatcataaagagaaggtggtgatcaccccggaagatgtagacctg
gttacccgacagatcgtttctgcctggacaaagatccagaacagggaattctacaccggt
tgtggtaaaaaggactgcgtatggtgcaattttgtgaaggataataaactctatgtggcg
cttcatgagcccgaagcggagaacctgatggagcttcccgcccgtttgggagactcaaca
ggggttacggcagactga
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