Chitinophaga filiformis: MYF79_04945
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Entry
MYF79_04945 CDS
T08225
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cfil
Chitinophaga filiformis
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfil03032
]
MYF79_04945
03400 DNA repair and recombination proteins [BR:
cfil03400
]
MYF79_04945
Enzymes [BR:
cfil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MYF79_04945
DNA replication proteins [BR:
cfil03032
]
Prokaryotic type
DNA Topoisomerases
MYF79_04945
DNA repair and recombination proteins [BR:
cfil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MYF79_04945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
RAP
Motif
Other DBs
NCBI-ProteinID:
UPK70644
LinkDB
All DBs
Position
1184464..1185546
Genome browser
AA seq
360 aa
AA seq
DB search
MDLIAEAMATAKAVKLRYVKSGTKGYSRERVKDGFQYRDQHGDIITDEEVLARIRGLVLP
PAWENVWICPYANGHLQATGTDALGRRQYRYHSTWARVRNETKYDRLLHFGEKLPQLRRH
IAVALRKKNLDKEKVTAIALSVMQETLIRVGNASYEKLYGSYGLTTLHVQHVKIDGNTAF
FKFKGKKGVLHKITLKHAQLAKLLQKVRDIPGQELFQYYEGEEHKSLDSGDINEYLKLWT
GEDYTCKDFRTWSGTVHALNLLADLTPFGSATECKQNLVQIIDSVAGKLGNTRAVCKKYY
IHPKILEAYEQCELEPYLEELRAGRNNASSGGLHNDEKILLKFMKSQQKKTVKMKAGIRN
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atggacctgattgctgaagcgatggctaccgcaaaagcggtaaaactacgatatgtgaag
tctggtactaaaggatatagccgggaaagagtgaaagacggctttcagtaccgcgatcag
catggagatataattacggatgaagaggtgctggcaaggatccggggccttgtactgccg
cctgcatgggaaaacgtatggatatgcccctatgccaatggccatttacaggctacaggc
accgatgccctgggaagaaggcagtaccgctaccattccacctgggcgcgggtgcgtaac
gaaaccaaatacgaccgcctgctacattttggggagaaactaccgcaactacgcaggcat
attgcagttgcgctccgtaagaaaaaccttgataaagagaaggttacagctatcgcgctc
agcgttatgcaggaaaccctgatccgcgtcggcaatgcttcctatgaaaaattatatggg
tcatacggacttacgacattgcatgtgcaacacgtcaaaatagacggaaatacggccttt
tttaagttcaaggggaagaagggcgtcctgcataaaataacgctaaaacacgcccaattg
gccaaattattacagaaggtcagggatattccggggcaggaattatttcaatattatgaa
ggggaggagcataagagcctggattcgggggatattaacgaatacctgaaactatggacg
ggggaggactatacctgtaaagatttcaggacatggtccggtaccgtgcatgcccttaat
ttgctcgctgatcttactcctttcggctctgcaacagaatgtaaacagaacctggtgcag
attatcgacagtgtggccgggaaactgggcaatacaagggctgtctgcaaaaaatactat
attcatccgaagatactggaagcctatgaacaatgtgaacttgagccctacctggaagaa
ttgcgggccggaaggaacaatgcctccagcggaggcttgcataacgatgaaaaaatactc
ctgaaattcatgaaatcacaacagaagaaaactgttaaaatgaaggcagggatcaggaat
taa
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