Chitinophaga filiformis: MYF79_06350
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Entry
MYF79_06350 CDS
T08225
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cfil
Chitinophaga filiformis
Pathway
cfil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYF79_06350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfil03019
]
MYF79_06350
03400 DNA repair and recombination proteins [BR:
cfil03400
]
MYF79_06350
Enzymes [BR:
cfil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MYF79_06350
Messenger RNA biogenesis [BR:
cfil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MYF79_06350
DNA repair and recombination proteins [BR:
cfil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MYF79_06350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
DnaD_N
HTH_41
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UPK70920
LinkDB
All DBs
Position
1517232..1519136
Genome browser
AA seq
634 aa
AA seq
DB search
MANPSDILKKYWGYTQFRPLQEEIIQSVSKGTDTLALLPTGGGKSICFQVPAMLSEGLCI
VVTPLIALMKDQVANLQKRNIPAVAIYAGMYYQDVERLLEEARRGKYKFLYLSPERLQSK
RFLEYCDGMPVNLLAIDEAHCISQWGYDFRPAYLEIATIRTYFPGVPLLALTASATPRVQ
QDICEKLLMKQPAIFTKSFARHNLSYSVIEEDNKPEKLKHILQRVQGSAIVYCRNRKRTR
EVAEMLEQSGIAATYYHAGLTGEERAVRQELWLNNRIRVMACTNAFGMGIDKPDVRVVIH
YDATDGLESYYQEAGRAGRDEKKSYAVLMYQQQELTEMVRMMALQFPEAEEIREVYQCLV
NYLQVAVGSAEGVYYDFDINDFVRKFELNITTAYSALKILEQEGILQLSESVFMPSRVEF
IISKQTLYDFTDMQPAYDPLLQTLLRTYEGIFDTPVPVYEKQVARLMRKPESQVIEWLQQ
LHQRRILKYNQRKEEPQLCFTQERVSAQHLRIDTNRIKERMKVYKERLDAMIDYIRNREV
CRTQMLVRYFGEKSTADCGVCDVCIEKKKKPLEGKEAEAIAVQLLAQLQAVPMEWADVRN
RLLTIKEDALLEVMQFLIAEGRAGRDALGRVHLL
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggccaatccatccgacatactcaaaaaatactggggatacacgcaattccgtccttta
caggaagagatcatccaatctgtcagcaagggtacagacacactggccctgctaccaaca
ggcggcggaaaatccatctgtttccaggtgccggctatgctcagcgaaggcctgtgtata
gtggtcacaccgcttattgccctgatgaaagaccaggtggctaacctgcaaaagcggaat
atacccgcagtagctatctatgcaggtatgtattaccaggatgtggaaagactgctggag
gaagcccgcaggggaaagtacaaattcctctatctctctcccgaacgcctgcaaagcaag
cgtttcctggaatattgtgatggtatgcccgtgaacctgctggccattgatgaagcacac
tgtatctctcagtggggatatgatttcaggccggcctaccttgaaattgctactatccgg
acttattttcccggggtgccgctactggcgctgacggcatcggctactccccgagtacag
caagacatctgtgagaagctgttaatgaaacagccggctatattcacaaaaagctttgcc
cgtcataatctttcctatagcgttattgaagaagacaataaaccggagaaattaaagcac
atcctgcagcgggtgcagggcagcgctattgtatactgccgaaacaggaagcgtacgcgg
gaagtggctgagatgctggaacaaagtggtattgctgccacctattaccacgcaggcctg
accggcgaggaacgtgcggtgcgacaggagctatggctgaataaccgtatcagggtaatg
gcttgtaccaacgcatttggtatgggcatagataagcccgatgtgcgcgtggtgatccac
tacgatgctacggatggacttgaatcatattaccaggaagcgggtcgtgcaggaagggat
gaaaagaagtcttatgccgtcttgatgtatcaacaacaggaactgacggaaatggtcagg
atgatggcgctgcagttccccgaagcagaggagatccgcgaggtgtaccaatgcctggtc
aattacctgcaggtggccgtaggaagcgcagaaggcgtttattatgatttcgacatcaat
gactttgtccggaaattcgaactgaatattaccactgcatatagcgcgttgaagatactg
gagcaggaaggtatcctgcagctgagcgaaagtgtgtttatgccttcccgtgtagagttc
atcatcagcaaacaaacgctgtatgactttacagatatgcagccggcatacgaccccctg
ttgcagacattgctgcgtacctacgaaggcatcttcgatacgcctgtaccggtgtatgaa
aagcaggtggcaagacttatgagaaaaccggaatcgcaggtcatagaatggttgcagcaa
ttgcatcagcgccggatcctgaagtataaccagcgcaaggaagaacctcagctatgcttc
acacaggagcgtgtttccgcacaacacctgcgtatcgataccaacaggataaaagagcgt
atgaaagtgtacaaagagcgcctggatgccatgatcgactatatccggaacagggaagtg
tgtcgtacacagatgctggtacggtattttggcgagaagagcacagctgactgcggtgtc
tgtgacgtgtgtatagagaaaaagaaaaagccgctggagggaaaggaagccgaagcaata
gctgtccaactattggcgcagctacaggccgtgccaatggagtgggcggatgtacgtaac
aggttattgacgataaaggaagacgctttactggaagtgatgcaattcctgatagcagag
ggaagagcgggcagggacgcactcgggagagtacatttgttgtag
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