Chitinophaga filiformis: MYF79_08640
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Entry
MYF79_08640 CDS
T08225
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cfil
Chitinophaga filiformis
Pathway
cfil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MYF79_08640 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfil03021
]
MYF79_08640 (rpoC)
03400 DNA repair and recombination proteins [BR:
cfil03400
]
MYF79_08640 (rpoC)
Enzymes [BR:
cfil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MYF79_08640 (rpoC)
Transcription machinery [BR:
cfil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MYF79_08640 (rpoC)
DNA repair and recombination proteins [BR:
cfil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MYF79_08640 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UPK71343
LinkDB
All DBs
Position
2056130..2060425
Genome browser
AA seq
1431 aa
AA seq
DB search
MAIKKENRPKSNFSSITISLASPDSILERSYGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECYCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIRLVVPVVHIWYFKSLPNKI
GYLLGMSSKKLETIVYYERYVIIQAGAKQEKGLNYGDLLTEEEYLDILDTLPKDNQLLPD
EDPNKFIAKMGAEAVEMMLARIDLDSLSYQLRNQAATETSQQRKAEALKRLSVVEAFREA
NGRVENRPEWMVMQYIPVVPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKLVDRKEA
VVWDILENVLKGHPVMLNRAPTLHRLSIQAFQPKLVEGKAIQLHPLVCSAFNADFDGDQM
AVHVPLSNAAILEAQLLMLSSHNILNPQNGTPITLPSQDMVLGLYYITKGKKSTPTEKVE
GEGKAFYSAEEVIIAYNEQRVNLHANIRVRATVRNDKGELETKLIETTVGRVIFNQHVPK
EAGYVNALLTKKSLREIIGDIIKYTDIPKTAKFLDDIKQLGFRTAFRGGLSFNINDLIIP
EVKQHMIDGASSEVDEVWDNYNMGLITNNERYNQIIDIWSRVDTKVTETLIRELANDKQG
FNSVYMMLDSGARGSKQQIKQLAGLRGLMAKPRKSGSTGSEIIENPILSNFKDGLNVLEY
FISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVINEEDCGTLRGIATSALKDNEEVV
EPLYDRILGRTSLHDVFDPHTEELIVEAGSLINEDIAHRIEDSSIDTVEIRSVLTCESRR
GVCVKCYGKNLATGYVTQRGDAVGIIAAQSIGEPGTQLTLRTFHVGGVAGSTSVDTGLQA
KFDGTIQFDGLRTTTYENNEGEKVQVVIGRTGELRIMDVKNDRLLITNNIPYGSTLLVKD
GQKVAKGDMICTWDPYNAVIVSEIAGNIRFDSIIEGITFREEADEQTGHREKVVIETKDK
NKIPSIYVDGNKEVKSYNLPVGSHIVIEEGEAVRAGQVIVKIPRILGKLRDITGGLPRVT
ELFEARNPSNPAIVSEIDGVVAFGNIKRGNREIIIESREGHIKKYLVPLTRHILVQDGDF
VKAGTALSDGSITPADILSIKGPFAVQEYLVNEIQEVYRLQGVKINDKHIEVIVRQMMRK
VNIEDPGDTRFLEGDTTDKFEFFEENDNIFDKKVVTEAGESTVLKAGQIVTLRQVREENS
LLRRQDKKLVEFRDAKPATSSPLLQGITKASLGTHSWISAASFQETTKVLSSAAINGKTD
DMLGLKENVITGHLIPAGTGLREFENMIVGSKEEYDILASSKEVFQFDEEE
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggccatcaagaaagaaaatcgtcctaaatcaaactttagcagcattaccatcagcctg
gcttctccggattcaatcctggagcgctcatatggggaagtgctgaagccggaaaccatc
aactaccgtacttacaagccggagcgtgatggtttattctgtgaaaggatcttcggcccc
gtaaaggactatgagtgctattgcggaaaatacaaacgtatccgttacaagggtatagtg
tgtgaccgatgcggtgtggaagtaacagagaaaaaggtacgtcgtgaaagaatgggccac
atccgcctggttgtgcctgttgtacacatctggtactttaaatcattaccaaataagatc
ggttacctgctggggatgagttccaagaaactcgaaaccatcgtttactacgaaaggtac
gtgatcatacaggctggcgctaaacaggagaaaggcctgaactacggcgacctgctgaca
gaagaagaatatctcgacatactggataccctgccgaaagacaaccagctgttgcctgac
gaggatccaaacaagttcatcgccaagatgggtgctgaagcggtagaaatgatgctggcc
agaatagacctggatagcctttcttaccagctgcgtaaccaggcggcaactgaaaccagc
cagcaacgtaaagcagaagcgctgaaacgtctgagcgtggtggaagctttccgtgaggca
aatggccgtgttgaaaaccgtcctgagtggatggtgatgcaatatattcctgtagtacca
ccagaactgcgtccgttggttccattggatggtggccgttttgcgtcttccgacctgaac
gacctgtaccgcagggtaattatccgtaacaaccgtctgaaacgtctgatcgagatcaag
gcgccagaggtgatcttacgtaacgaaaaacgtatgctgcaggaagcagttgactccctc
ttcgataactcccgtaaatcaaatgcggtgaaagcggaaggtggacgtgcactgaaatcc
ctgtctgacgtactgaaaggtaaacaaggtcgtttccgtcagaacctgttgggtaaacgt
gttgactactccggtcgttccgttatcgtggtaggtcctgaactgaaactgcacgagtgt
ggtttgcctaaggatatggcggctgaactgttcaaaccgttcattatccgtaagctgata
gaaagaggtatcgttaaaacggtaaaatcagcgaagaagctggttgacagaaaagaagca
gtggtttgggatatcctggaaaatgtactgaaagggcatcctgtaatgttaaaccgtgct
ccgaccctgcaccgtttgtctatacaggcgttccagcctaaactggtggaaggtaaggcg
atccagctccacccactggtgtgttctgcgttcaacgccgactttgatggtgaccagatg
gccgtgcacgtaccgctcagcaatgctgcgatactggaagcacagttactgatgctgtca
tcacacaacatcctcaacccgcagaacggtacgcctatcaccctgccttcacaggacatg
gtattggggctgtactacatcaccaaaggcaagaaatctactcctactgaaaaagtagaa
ggagaaggtaaggctttttactctgcagaagaggtgatcatcgcttataacgagcagcgg
gtaaacctgcatgcgaacatccgcgtaagagcgactgtacgtaatgacaagggtgaactc
gaaactaagctgatcgaaacaactgtaggccgtgtgatcttcaaccagcacgttccaaaa
gaagctggttatgtgaatgcactgctgaccaaaaaatccctgcgtgagatcattggcgac
attatcaagtacactgatatccctaagactgcgaagttcctggatgatatcaagcagctt
ggtttccgtaccgcgttccgtggtggattgtccttcaatatcaatgacctgatcatcccc
gaagtgaaacagcacatgatcgatggtgcttccagcgaagtggatgaagtatgggataac
tataacatgggtctgatcacgaataacgaacgttataaccagatcatcgatatctggtcc
cgtgtggacaccaaagtaactgaaacgctgatccgtgagctggcgaatgacaaacagggc
ttcaactctgtgtacatgatgcttgattccggtgcgcgtggttccaaacagcagatcaaa
cagctggccggcctgaggggattgatggcaaaaccgcgtaagagtggatctaccggttct
gagatcatcgagaacccgatcctgtccaactttaaagatggtctgaacgtattggaatac
ttcatctctacgcacggtgcccgtaagggtcttgcggatacggcactgaaaacggcggat
gcgggttacctgacccgtcgtctggtggacgtagcacaggatgtggtgattaatgaagaa
gactgtggtacactccgtggtattgcgacttctgcactgaaagataacgaagaggtggtt
gaaccactgtacgaccgtatccttggccgtacatccctgcacgacgtattcgatcctcat
acagaggagctgatcgttgaagcgggtagcctgatcaacgaagatatcgctcaccgtatc
gaagacagttctattgatactgtagagatccgttccgtgctgacctgcgaaagccgcaga
ggcgtgtgcgtgaaatgttacggtaagaacctcgctaccggttatgtgacccagcgtggt
gatgctgtaggtatcattgcggcacagtccatcggtgagcctggtacacagctgacactg
cgtaccttccacgtgggtggtgtggctggttctacttctgtggataccggcttacaggct
aaattcgacggtactatccagttcgatggtctgcgtactactacatacgaaaacaacgag
ggtgaaaaagttcaggtggtaattggccgtaccggtgaattacgtatcatggacgtgaag
aacgacaggttgctgatcaccaacaacattccgtacggatctaccctgctggtaaaagac
ggacagaaagttgcgaaaggtgacatgatctgtacatgggatccatacaacgccgttatc
gtatctgagatcgcaggtaacatccgtttcgacagcatcatcgaaggtatcaccttccgt
gaagaggctgacgagcagactggtcaccgtgagaaagtggtaattgaaaccaaagacaag
aataagatcccgtctatctatgtagacggtaataaggaggtgaaatcttataacctgccg
gtaggctcccatatcgtaattgaagagggtgaagctgttagagctggtcaggtaattgtt
aagattcctcgtatacttggaaaactgcgagacatcacgggtggtctgccacgtgtaacg
gaactgtttgaagcacgtaacccaagcaatcctgccatcgtatctgaaattgatggtgtg
gtagctttcggtaacatcaaacgtggtaaccgtgagatcatcatcgaaagccgtgaaggt
catatcaagaaatacctggtgccattgacccgtcacatcctggtacaggacggtgacttc
gtgaaagctggtacagcgttgtctgatggttctatcactccggcagacatcctgtccatc
aaaggaccgtttgctgttcaggaatacctggtaaatgagatacaggaagtataccgttta
cagggtgtgaagatcaacgacaagcacattgaggtgatcgtacgtcagatgatgcgtaaa
gtgaacatcgaggatccgggcgatacccgcttcctggaaggtgacactaccgataaattt
gaattctttgaagaaaacgacaatatcttcgataagaaggtggttacagaagccggtgaa
tctaccgtgctgaaagctggtcagatcgttaccctgcgccaggtaagggaagaaaactcc
ctgctgcgccgtcaggataaaaaactggtggaattccgtgatgcaaaaccggctacctcc
agcccgctgttacagggtattaccaaggcgtccctgggtactcacagctggatctctgca
gcatccttccaggaaacaaccaaggtactgtcttctgcagccatcaacggtaaaacagat
gacatgctcggcctgaaagagaacgtaatcaccggtcacctgatacctgcaggtacaggt
ctgcgtgagttcgaaaacatgatcgtaggatccaaagaagaatatgatatcctggcgtct
tccaaagaagtgttccagtttgacgaagaagaatag
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