Chitinophaga filiformis: MYF79_09725
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Entry
MYF79_09725 CDS
T08225
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cfil
Chitinophaga filiformis
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfil03032
]
MYF79_09725 (topA)
03400 DNA repair and recombination proteins [BR:
cfil03400
]
MYF79_09725 (topA)
Enzymes [BR:
cfil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MYF79_09725 (topA)
DNA replication proteins [BR:
cfil03032
]
Prokaryotic type
DNA Topoisomerases
MYF79_09725 (topA)
DNA repair and recombination proteins [BR:
cfil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MYF79_09725 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Glucosaminidase
Motif
Other DBs
NCBI-ProteinID:
UPK71557
LinkDB
All DBs
Position
complement(2339308..2341662)
Genome browser
AA seq
784 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKILGKDFEVKSCFGHIRDLEKDDMGIDIPNNFKPKYTIPEDK
EKIVKELKKLAKETEEVWLATDEDREGEAISWHLCEVLGLDPDVTKRIVFHEITKPAIEK
AVQQPRLLDMNLVNAQQARRILDRIVGFELSPVLWRKMSMRNSLSAGRVQSVAVRLIVER
EREINTFNAVSSFRVEAFFTAKDLQGKNITFKAEGPTRFKTAEDAEKFLEQCIGAAYSVK
DIQVKPGKKSPAAPFTTSTLQQEASRKLGYSVSKTMLLAQKLYESGKITYMRTDSVNLSD
TALADIQNAITTNYGQKYHQHRKFKNKNESAQEAHEAIRPTYMENASVDDSDTKKLYELI
WKRTIASQMSDAELEKTIAKIDISTNHEELTASGEVLKFDGFLKVYMEGKDDEDVSDEDE
NDGSLPPLAVKQVLDLKEMKATERFTRPAPRYTEASLVKKLEELGIGRPSTYAPTITTVQ
KRGYVEKRDKEGVKRDFRILNLKADKITKITDTENTGAEKSKLFPTDLGMIVTDFLNQYF
GSVMDYGFTAKIEGEFDEVAHGKKVWNKMLNDFYTPFHKDVENTLEKAERVKGERLLGTD
AETGKPIVARMGRYGPMIQIGKAEDEEKPKFAKMKSTQSIETITLEEAMELFKLPRNLGK
FEDEDVLVNIGRFGPYAAHDKKFYSLKKEMDPYTVELDEIAPLIVEKRAAKDERTIKIFE
KEKIQILKGPYGPYIKQGLRNYKIPKEKIDTAADITLEEAKAIIEDVKANPPKKKAPPRK
KKAE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaatctagtaattgttgagtctccggcgaaagccaagacgattgaaaagata
ctgggcaaagacttcgaggtaaaatcctgctttggtcacatccgcgatctggagaaggat
gatatgggtattgatatccccaataactttaaacctaagtatactatacctgaggataaa
gagaagatagttaaggaattaaagaaacttgcgaaagaaactgaggaagtttggttagca
acggatgaggaccgtgagggggaagccatctcatggcatttatgtgaggtactgggtctt
gacccggacgttaccaaacgtatcgttttccatgaaattactaagccagccatcgaaaaa
gccgtacaacagccccgcctattagatatgaacctggtcaacgcccagcaggccaggcgt
attcttgacagaatagtaggttttgaactatcgcccgtgctctggcgtaagatgagcatg
cgtaattcattgtctgccggccgtgtacaatctgtagcggtaaggctgatcgtagagcgg
gaacgtgagatcaatacattcaatgccgttagcagttttagggtagaagccttctttact
gctaaagatcttcaaggcaaaaatattacttttaaagctgaaggccccacccgcttcaag
actgccgaagatgctgaaaagttccttgagcagtgcatcggcgcagcctattcggtgaag
gacattcaggtaaaacctggtaagaaatcgcctgcagccccattcactacttctaccctg
caacaggaagccagccgtaaactgggctatagcgtttccaaaacaatgttgctggcgcag
aagttgtatgaaagtggtaagatcacgtatatgcgtactgactctgtgaacctgtcagac
acagcgctcgcagatatccagaacgccattactaccaactacgggcagaaatatcatcag
caccgtaaattcaagaataaaaatgaatctgcccaggaggcgcatgaggcaatccgccca
acctatatggaaaatgcgtctgttgatgacagcgataccaaaaagctctatgaactgatc
tggaaacgtaccatcgcaagccagatgagcgacgcggaactggagaagacgattgctaaa
attgacatctccaccaatcacgaagagctgacagccagtggtgaagtattgaagtttgac
gggttcctgaaagtatacatggaaggtaaagacgatgaagatgtgagcgatgaggacgaa
aatgacggctctttgccaccattggcggtaaaacaggtgcttgacctgaaagaaatgaag
gccactgaacgttttacccgtcctgcaccccgctatacagaggccagcctggtaaagaaa
ctggaagaactgggtatcggacgtccatccacctacgctcccaccattactaccgttcag
aaacgtggttatgtggagaaacgtgataaggaaggcgtaaaaagggacttccgtatcctc
aacctgaaagccgacaagatcaccaagatcacagatacggagaataccggcgcagaaaaa
tccaaactgttcccgacagacctgggtatgatcgtgaccgacttcctgaaccagtatttt
ggttctgtgatggactacggtttcactgcgaagatcgaaggagaatttgacgaggtggcc
cacggtaagaaggtctggaacaagatgctgaacgacttctatacacctttccataaagat
gtagagaacacgctggaaaaggcggaaagagtaaaaggcgaacgcctgcttggcactgat
gccgaaacaggtaaaccgatcgtagcgcgcatgggacgttatggccctatgatccagatc
ggtaaagcggaagacgaagagaagccgaaattcgcaaaaatgaagtccactcaaagtata
gaaactattactttagaggaagcgatggaactgttcaaactaccccgcaacctgggtaaa
tttgaagacgaagatgtactggtgaacattggcaggttcggaccttatgcagcgcatgat
aagaagttctattccctgaaaaaggaaatggacccatacacagtggagctggatgaaata
gccccgctgatcgtagaaaagagagcagccaaggatgaacgcaccataaaaattttcgaa
aaagaaaagatccagatactgaaaggcccctacggaccgtatataaaacagggattaagg
aattacaagataccaaaagaaaagattgacaccgccgctgacataacactggaagaagct
aaagccatcatcgaagatgtcaaggccaatcctccaaagaagaaagcgccaccgaggaag
aagaaggcggaataa
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