Chitinophaga filiformis: MYF79_22270
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Entry
MYF79_22270 CDS
T08225
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfil
Chitinophaga filiformis
Pathway
cfil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYF79_22270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfil03019
]
MYF79_22270
03009 Ribosome biogenesis [BR:
cfil03009
]
MYF79_22270
Enzymes [BR:
cfil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MYF79_22270
Messenger RNA biogenesis [BR:
cfil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MYF79_22270
Ribosome biogenesis [BR:
cfil03009
]
Prokaryotic type
rRNA helicases
MYF79_22270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
UPK67677
LinkDB
All DBs
Position
complement(5754000..5755736)
Genome browser
AA seq
578 aa
AA seq
DB search
MTTFETLGLQEPILKGIQDLGFIAPTPIQEKAIPVLLGGDRDFVGLAQTGTGKTAAFGLP
LLQQIDIKQRHPQGLILCPTRELCLQITNDLKNFSKHLGDVSIVAVYGGSSIVQQLRDLK
RGVHIVVATPGRLLDIIERKAVNFTNVRYVVLDEADEMLNMGFQEDINNILSNTPDEKTT
WLFSATMPQEVRRIAQKYMTDPFELTVGNKNSGNVNIEHEYYVVRPREKYAALKRIVDFN
PEIFGIIFTRTKIESQEIAESLIRDGYNADALHGDLTQQQRDKVMKRFREKSLQVLVATD
VAARGIDVDNVTHVINYELPDDVENYTHRSGRTARAGKSGVSIAIISGRDIGKIRQIERV
IGKKFTKVEVPDGFAVCEKQLFGLVHKVHNVVVNEEQIEPYLERIFEEFAAMSKEEIIKR
FASLEFNQFLEYYQDAPDLNVKEERRSLDGGTDRRSNNGKFTRLFINLGSVDDFTRGDML
RYLCDTSGVRGNKIGRIDLKGVYSFFEVENDVVEKFQQTFKKAEYNGRSVRIEMSQDGDK
RRSGGSRPPREGGSSGRRWEGSSAGSGAGRSGGFKKRY
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgactacatttgaaacattaggcttacaagagccgattttaaaaggaatccaggacctg
ggatttattgcacctacgccaatacaggaaaaagctattcctgtgttattagggggcgac
agggactttgtaggtttggcccagacgggcacaggtaagacggcagcatttggcctgccg
ctgctacagcagatagatattaaacaacgtcatccacagggattgatcttgtgtccgaca
cgtgaattatgtttacagatcaccaatgacctgaagaacttcagcaagcacctgggtgat
gtgagcatcgtagccgtgtatggtggttccagcatcgtgcagcagctgcgcgatctgaaa
agaggcgtgcacatcgtagtggcaactcccggccgtctgctcgatatcatcgagagaaag
gcggtaaactttaccaacgtacgttatgttgtactggacgaagcagatgaaatgctgaac
atgggtttccaggaagacatcaacaatatattatccaatacacctgatgagaagaccacc
tggttgttctccgctaccatgccgcaggaggttcgccgtattgcacagaaatacatgacg
gatccttttgagctgactgtaggtaacaagaacagtggtaacgtcaatatcgagcacgaa
tattacgtagtacggccacgcgaaaaatacgcggcgctgaaacgtatcgtggatttcaac
cctgagatcttcggtatcatctttacccgtaccaagatcgaatcacaggaaattgcagaa
tcacttatccgtgacggttataatgccgatgcactgcatggcgaccttacacagcaacag
cgtgacaaggtaatgaaacgcttccgtgagaaatcactgcaggtactggtagctacggat
gttgctgcccgtggtatcgacgttgacaacgtaacacacgtgatcaactacgaactgcct
gatgacgtggagaactacactcaccgttccggccgtacggcgcgtgctggtaaatccggt
gtatctatcgctatcatcagcggtcgcgatatcggaaagatccgccagatcgaaagagtg
atcggtaagaaatttaccaaagtagaagtaccggatggtttcgcagtatgtgaaaaacaa
ctcttcggacttgtacataaggtacacaacgttgtagtgaacgaagaacagatagaacct
tacctggaacgcatattcgaagagtttgcggccatgagcaaggaagagatcatcaaacgt
tttgcttccctggagttcaaccagttcctggaatactaccaggatgcaccggacctgaac
gtgaaggaagaaagaaggtcattggatggtggtaccgaccgcagaagcaacaacggtaaa
tttacccgcctgttcatcaacctgggttctgtagacgactttacccgtggcgacatgtta
cgctacctctgcgataccagtggcgtacgcggtaacaagatcggccgtattgacctgaag
ggtgtttactccttcttcgaagttgagaacgacgtggtagagaaattccagcagaccttc
aagaaggcagaatacaatggccgcagcgtgcgtatagaaatgtcgcaggatggcgataaa
cgtcgttccggtggcagccgtcctccacgtgaaggcggtagcagcggcagacgttgggaa
ggcagcagcgccggaagcggagctggccgtagcggcggttttaaaaagagatattaa
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