Chitinophaga filiformis: MYF79_25150
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Entry
MYF79_25150 CDS
T08225
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cfil
Chitinophaga filiformis
Pathway
cfil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYF79_25150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfil03019
]
MYF79_25150
Enzymes [BR:
cfil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MYF79_25150
Messenger RNA biogenesis [BR:
cfil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MYF79_25150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
ERCC3_RAD25_C
DUF530
AAA_19
Cas3-like_C_2
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UPK68248
UniProt:
A0ABY4HXU8
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All DBs
Position
6481374..6482714
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AA seq
446 aa
AA seq
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MSFEQLRLVEPLLKALEHEGYTNPTPIQQQAIPFVLDKKDLLGCAQTGTGKTAAFAIPLL
QLMHEDQQASRKGPRNIKALILTPTRELAIQIQESFTAYGRFLDLKSLVIFGGVSQHPQT
EALKKGVDILIATPGRLLDLISQNYITLRDIKYFILDEADRMLDMGFVHDVKRVIIKLPE
QRQTLFFSATMPPEIQTLANAILRNPAKVEVTPVSSTAETITQSMYFVNKSDKRNLLLHI
LKDKSIRTALVFTRTKHGADKVVKDLNKAEITAEAIHGNKSQNARQRALSNFKSQQTRVL
VATDIAARGIDIDELTHVINYELPNVPETYVHRIGRTGRAGAKGMAISFCEGEEKAFLKD
ILKLIARDIPVVTEHPFHNGDSITAPVQRPAAPKPKQQHPRDKKGGFSRNRQGHVAPRQQ
KDNGNGQPRHGQQHRNNQQRERSASR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatttgaacagttaaggctcgtcgagcccttgctgaaggccttggagcacgaaggt
tataccaatccaacgcccattcagcagcaagctataccctttgtacttgataagaaggac
ctgctgggttgcgcccagaccggcaccggtaaaacagccgcttttgcgatccccctttta
caattaatgcatgaagaccagcaggcttcacgcaaaggcccccgcaatattaaagcgctt
atcctgacgcccacccgtgaactggctatacagatacaggaaagtttcactgcctacggc
aggttcctcgacctgaaaagcctggtcatctttggaggcgtttcccagcatccgcaaaca
gaagccctgaaaaaaggcgttgatatcctcatcgctacaccaggccgtttgctggatctt
atcagtcagaattatatcacgctgagagatattaaatacttcatcctggatgaagccgac
agaatgctggacatgggatttgtacatgacgtaaaacgcgtcatcatcaaattgccggaa
caacgtcaaacgctgttcttctctgccaccatgcctccggaaatacagacactggcaaac
gcgatcctgcgtaatcctgccaaagtggaagtaacaccggtatcatccaccgcagagacc
atcacacagtccatgtacttcgtgaataaaagcgataagcgcaacctgctgctgcacatc
ctgaaagacaaatctatccggaccgcgcttgtcttcacccgtaccaaacatggtgcagat
aaagtggtgaaagacctgaacaaagcagagatcacagctgaagcgatccatggcaataaa
tcacagaatgcccgtcagcgcgccctgagcaatttcaagtcacagcagacgagagtactg
gtagcgactgacatcgcagccaggggtatcgatatcgatgaactgacgcacgtgatcaat
tacgagctgccaaacgtacctgaaacatacgtacaccgtatcggccgtaccggccgcgct
ggtgcaaaaggcatggccatctctttctgtgaaggagaagaaaaggcatttctgaaagat
atcctgaagcttattgcacgcgatattcctgtagtaacggaacatccgtttcacaatggc
gacagtattaccgctcctgtgcagcgccccgcagcaccgaagcctaagcagcaacatccc
cgcgataaaaagggaggtttctcccgcaaccgccagggacatgtagcaccacgccagcag
aaagacaatggcaacggtcagccgcgacatggccagcagcatcgtaacaatcagcaacgc
gaaagatccgcgtcaagataa
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