Chitinophaga filiformis: MYF79_27755
Help
Entry
MYF79_27755 CDS
T08225
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfil
Chitinophaga filiformis
Pathway
cfil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MYF79_27755 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfil03400
]
MYF79_27755 (ligD)
Enzymes [BR:
cfil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MYF79_27755 (ligD)
DNA repair and recombination proteins [BR:
cfil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MYF79_27755 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
UPK68760
LinkDB
All DBs
Position
7099480..7101489
Genome browser
AA seq
669 aa
AA seq
DB search
MRKKSSSSKPSGRTRAKFPVTVAPMLATLVNKPVEEPGWMYEVKWDGYRAIALLNKGNVQ
LISRNNKPFDEKFYPVHNALKAWNIQAVTDGEIVVLNESGSSSFGDLQNWRSEADGELIY
YVFDLLWLNGYDLTQLPLVQRRELLQQLFPAPDIIRLSASFNTSPSEFLTAATSLGLEGI
IAKKEDSLYYPGVRSNEWLKIKINKRHEVVIGGYTRNENSSKPFSSLLVGVFDNGKLQYT
GKIGTGFSTARQKEMMQLFKPLTIKKSPFTTVPDINKPSRFRPNPPKAVATWLKPELVCE
VSYAEITSDGVMRHPSFEGMREDKAAKDVKREAPQPVTKATAKTGTAISQKMLTPVIGGN
RKTLLNPSEDTQVRKINKHELKFSNLNKIFWPEEKYTKRDMLNYYYQIAPYIVPYLKDRP
QSLNRFPNGIKGKSFYQKDVTGKAPDWIKTFPYHTSDGEDKNFMVGTDEASLLYMASLGS
IEMNPWNSRIQKPDYPDWCIIDLDPTEKNTFEQVIETALVTKEVLDSIKAPGYCKTSGST
GIHIYIPLNAKYTYDECQLFGKWIATQVHAALPAFTSIERMTQNRKGRIYVDYLQNRPKA
TLAAPYSLRPKPGATVSMPLHWDEVKKGLKMKDFNITNAVARVNEMGDIFKPVLGKGIDM
KKILSAIQP
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaaaatcctcatcttccaagccttcggggcgaacaagggctaagttccctgtt
acggtagcacccatgctggctacactggtcaataaaccagtggaagagccggggtggatg
tacgaggtgaaatgggatggttaccgtgctatagccttattgaataaggggaatgtacaa
cttatctcacgcaacaataaacccttcgatgagaaattctatccggttcacaatgcctta
aaagcatggaacatccaggcagtaacagatggggaaatagtggtgctcaatgaaagcggg
tcttccagcttcggagacctgcaaaactggaggagtgaagctgatggagaattgatctat
tatgtattcgacctattgtggctgaatggatacgaccttacacaattaccgctcgtacaa
cgcagggaactgttgcagcaactgtttcccgctcccgatatcatcaggcttagcgccagc
ttcaatacatcgccctcagagttcctgacggcggcaacatcactgggcctggaaggtatc
attgccaaaaaggaagatagcctttattatcccggtgtacgtagcaacgaatggttaaag
atcaagatcaataaaagacatgaagtggtcataggcggttatacccgcaatgaaaactct
tcaaaacctttcagctcattgctggtgggcgtttttgataatggcaaattgcaatatacc
ggcaaaataggcaccgggttttccactgccaggcagaaggagatgatgcagttattcaaa
ccactgaccataaaaaaatcgccttttacaacagtcccggatattaataagccctcccgt
ttcaggcccaatccaccgaaggcagtagctacctggttaaagcccgagctggtatgtgaa
gtaagttatgcagagatcacttcggatggcgtgatgcgccacccctctttcgaaggtatg
cgggaagataaagcagcaaaggacgttaaaagagaagcgccccagcctgttaccaaagca
acagcgaaaacaggtacggctatctcccaaaagatgttaacaccggtgataggcggcaac
cgtaaaacattgctcaatccatccgaagatacacaggtccggaagatcaataaacatgaa
ctgaaattctccaatctcaacaaaatattctggccggaagagaaatataccaaacgggac
atgctgaactactattaccagatagccccgtatatagtgccatacctgaaagaccgcccc
cagtcgctgaacaggttccccaatggtataaagggcaagagcttttaccagaaagatgtg
acagggaaagcgcccgactggatcaagacctttccttatcataccagtgatggtgaagat
aagaacttcatggtaggaacggacgaagccagcctattatatatggcgagtctgggcagc
attgaaatgaacccctggaacagcaggatacaaaagccggattatccggattggtgtata
attgacctggatccgacagaaaagaatacctttgagcaggtaatagaaacagcgctggtc
accaaagaagtgcttgacagtatcaaagccccgggatattgcaaaacatccggttctacc
ggcatacatatctacattcctttaaacgctaaatatacttacgatgagtgccagttgttc
ggcaagtggatcgctacacaggtacatgccgcattgcccgcatttaccagtatagagcgt
atgacacagaacagaaagggcaggatatatgttgattatttacaaaacaggcccaaagcc
acactggcagccccctactcattacggccgaagccaggcgctaccgtctccatgcctttg
cattgggacgaagtaaaaaagggactaaaaatgaaagacttcaatattaccaatgcagtg
gcccgggtcaatgaaatgggcgatatattcaaaccggtactcggcaagggaattgatatg
aagaagatactaagtgctatacaaccatga
DBGET
integrated database retrieval system
