Chitinophaga filiformis: MYF79_27840
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Entry
MYF79_27840 CDS
T08225
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cfil
Chitinophaga filiformis
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfil03016
]
MYF79_27840
Enzymes [BR:
cfil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MYF79_27840
Transfer RNA biogenesis [BR:
cfil03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MYF79_27840
Prokaryotic type
tRNA splicing ligases
MYF79_27840
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
PIG-L
Motif
Other DBs
NCBI-ProteinID:
UPK68777
UniProt:
A0ABY4HYW7
LinkDB
All DBs
Position
complement(7117849..7119273)
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AA seq
474 aa
AA seq
DB search
MHMNNISGKDLLAIGYQQGKMLGLALEVLEKHYQGAEHEAVLTLMKDLLERPEAFLDHEI
LEDLATKMIEDAKEIENTIFLNNTSREFAVYGSEYIAAGAVAQMQTAMKLPVTVAGALMP
DAHQGYGLPIGGVLAAKNAVIPYGVGVDIGCRMALSIFDITEENFLLNRDTYKRELIAHT
RFGAGHGYHGKDRTDHAILDRNEFNLTQFIKALKDKAYSQLGTSGGGNHFVEWGIIEFAE
DDQPLNIPKGKYLALLSHSGSRGMGATIAGYYTRLAKELCKLPREAANLAYLDMNSEAGQ
EYWLAMNLAGDYASACHEVIHDKLAKAIGGTLLAKVENHHNFAWKETWNGEEVIVHRKGA
TPAGKGVMGIIPGSMTAPGFLVRGKGEETAINSASHGAGRQMSRTAAMQHITRQEMQAML
QANGVTLIGAGLDEAPMAYKDINVVMEAQKDLVDIVAKFSPKMVRMADDGSKED
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcatatgaacaacattagtggtaaagatctgctggctatcgggtatcagcagggtaag
atgcttggattggcgcttgaagtactggaaaaacattaccagggagccgaacatgaggcc
gtgctgacattaatgaaagatctgcttgaaaggccggaagctttcctggatcatgagata
ctggaagaccttgcaacgaagatgatcgaagatgcaaaggagatagagaataccattttc
ctgaacaatacatccagggagtttgctgtatacggatcggagtatattgctgctggtgca
gtagcacagatgcaaacggcaatgaagctcccggttacggtagccggtgctttgatgccg
gacgcccaccagggatatggcctgccgataggtggcgtgctggctgcaaagaacgcagtg
ataccttatggtgtgggggtggatataggatgccgtatggccctctctatctttgatatt
acggaagagaacttcctgctgaaccgcgatacctacaagcgtgaactgatcgcacatacc
cgttttggcgccggacacggataccatggtaaagacagaacagatcatgccatactggac
aggaatgagttcaatctgacacaattcatcaaagccctgaaagataaagcatattctcag
ctgggtacctccggcggaggaaatcactttgtggaatggggtattattgaatttgcagaa
gatgatcagccattgaatattcccaaggggaaatacctggcgctgttgtctcactccggc
tccagggggatgggcgctaccattgccggttattatacccggctggcaaaagagttgtgt
aaactgcccagagaagccgccaacctggcctacctggacatgaatagcgaagcggggcag
gaatactggctggcgatgaacctggccggcgactacgcttccgcctgccatgaagtgatc
cacgataaactggctaaagccattgggggtacgcttttggctaaagtggaaaaccaccac
aactttgcctggaaggagacctggaacggggaagaagtgatcgtgcatagaaaaggggct
actccggcaggtaagggtgtaatggggatcattccgggatcaatgacagctccgggattc
ctggtgcggggaaaaggagaagagacagccatcaattccgcttcacacggggccggacgg
cagatgagccgtaccgcagccatgcagcacattacccggcaggagatgcaggcaatgttg
caggctaatggcgtaaccctgataggcgccggactggatgaagcgcctatggcctataaa
gatatcaatgtggtgatggaagcgcagaaagacctggtggatattgttgccaaattcagc
ccaaaaatggtgagaatggcagatgacggaagtaaagaggactga
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