Chitinophaga filiformis: MYF79_28390
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Entry
MYF79_28390 CDS
T08225
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cfil
Chitinophaga filiformis
Pathway
cfil03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MYF79_28390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfil03400
]
MYF79_28390
Enzymes [BR:
cfil01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MYF79_28390
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MYF79_28390
DNA repair and recombination proteins [BR:
cfil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MYF79_28390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
UPK68883
LinkDB
All DBs
Position
complement(7273506..7274285)
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AA seq
259 aa
AA seq
DB search
MPELPDLQVFSHNLDKKLAGKTVKDVSLENTKKAKDTPAAFKKAIKGEKLEEVYREGKEL
RFRFKNDVVLGMHLMLHGKLYFFEEKNTNKHTILEILFEDGTGLALTDYQGIALPSLNPE
ETGVPDALSDELTVEYLQEQLGKKRTVIKKILLDQHIIRGIGNAYADEILWEAGISPFSV
SNRIPAAKIKALHRAIHKVLKDAEKSIRKEHPDIIAGEIRDFLKIHQPRETNSPTGGKIE
QKELNGRKTYYTDEQELFE
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagatctgcaggtattcagccataaccttgataagaaactggcaggg
aagacagtgaaagacgtgtccctggagaataccaaaaaagcaaaagatacgcctgccgct
tttaagaaagctataaaaggagagaagctggaggaagtataccgggaggggaaggaactg
cgcttcagatttaagaatgatgtggtgctgggtatgcacctgatgctgcatggcaaacta
tatttctttgaggaaaagaatacgaacaagcatacaattctcgaaatattatttgaagac
ggaacagggctggcgctgaccgactaccagggcattgcgctaccatcattgaaccccgaa
gagacaggtgttcccgatgcattatcagatgaattgacagtagaatacctccaggagcag
ttaggtaagaagaggactgttatcaaaaagatattactggatcagcatattattcgtggt
ataggtaatgcctatgccgacgaaatactatgggaagccggcatctcgccgttttccgtc
agcaacaggataccggcagcaaaaattaaggccctgcatcgcgccatacacaaggtcctg
aaagatgcagagaaaagcatccgtaaagaacatcctgatattattgcaggagagatacgc
gatttcttaaagatccatcagcccagggaaaccaatagtcctacaggaggaaaaatagaa
cagaaggagctgaatggcaggaagacgtattatacagatgaacaggaattattcgaatag
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