Chitinophaga filiformis: MYF79_28540
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Entry
MYF79_28540 CDS
T08225
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
cfil
Chitinophaga filiformis
Pathway
cfil03030
DNA replication
cfil03430
Mismatch repair
cfil03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cfil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MYF79_28540 (holA)
03430 Mismatch repair
MYF79_28540 (holA)
03440 Homologous recombination
MYF79_28540 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfil03032
]
MYF79_28540 (holA)
03400 DNA repair and recombination proteins [BR:
cfil03400
]
MYF79_28540 (holA)
Enzymes [BR:
cfil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MYF79_28540 (holA)
DNA replication proteins [BR:
cfil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MYF79_28540 (holA)
DNA repair and recombination proteins [BR:
cfil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MYF79_28540 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
HTH_28
Motif
Other DBs
NCBI-ProteinID:
UPK68913
LinkDB
All DBs
Position
complement(7306258..7307253)
Genome browser
AA seq
331 aa
AA seq
DB search
MEYQDIIKDWKQKKYKPLYWLEGEEDFFIDQVSNYAEHHLLDDAEKGFNLTILYGKDTDW
STVINACRRYPMFAEKQVVVLKEAQSMKDILKLETYIDNPLSSTIFVVAHKQGKIDGRSK
LAKLIKEKGVLLSTKKMYDNQLPGWVEAYVSSLGRAISQKAGILLVDHIGNDLSRMANEI
DKLLVNLPPDKKIDENDIEKYVGISKEYNVFELQNALGQKDIGKVMRIIRYFAANPKAGP
IQMVLPALYNFFSKMNMVFGVKGGEKEIAAALGVHPFFVKDYVNAARQYGVEGTEKAILL
LHAYNLRSIGINDSGVEDGELMKELVYKLMY
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atggaatatcaggatattataaaagactggaagcaaaagaaatacaagcccttatactgg
ttggaaggggaggaagattttttcattgaccaggtaagcaattatgctgaacatcacctg
ctcgatgatgccgagaaagggtttaacctgaccatcctctatggaaaggacacggattgg
agcacagttatcaacgcctgccgccgttaccccatgtttgccgagaagcaggtagtggtg
ctgaaggaggcacagtccatgaaagatatcctgaaactggaaacctatatcgataatcca
ttgtcttccaccattttcgtggtagcacataaacagggtaagatagacgggcgcagtaaa
cttgctaaactgatcaaggagaaaggggtgttactgagcaccaagaagatgtacgacaac
cagttgcctggctgggtggaagcctatgtaagcagcctcggaagagctatttctcaaaaa
gcgggtatcctgctggtagaccatatcggtaatgacctttccaggatggccaatgaaatt
gataaactgctggtcaacctgccgcccgataaaaagatagatgagaatgacatcgaaaaa
tatgtcgggatcagcaaggaatataatgtgtttgaactgcagaatgcactgggtcagaaa
gatattggcaaggtgatgcgcattatccgttattttgccgccaaccccaaggcgggccct
atccagatggtactgccggccctgtataatttctttagcaaaatgaacatggtcttcggt
gtaaaaggcggagaaaaggagattgcagccgctttaggcgtacatcccttctttgtgaag
gattatgtcaatgccgcccgtcaatacggcgtagagggcacggaaaaagccattttgctg
ctgcatgcctataaccttcgcagcattggtatcaatgacagcggtgtagaagacggggaa
ctgatgaaggaactggtatacaagctgatgtattga
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