Cytobacillus firmus: NAF01_00665
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Entry
NAF01_00665 CDS
T08260
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cfir
Cytobacillus firmus
Pathway
cfir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NAF01_00665 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfir03021
]
NAF01_00665 (rpoC)
03400 DNA repair and recombination proteins [BR:
cfir03400
]
NAF01_00665 (rpoC)
Enzymes [BR:
cfir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NAF01_00665 (rpoC)
Transcription machinery [BR:
cfir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NAF01_00665 (rpoC)
DNA repair and recombination proteins [BR:
cfir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NAF01_00665 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
URT71066
LinkDB
All DBs
Position
130784..134383
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTALEKKQLLSEKEYRAYREKYGNKFQASMGAESIKKLLS
DIDLNKEVDTLKEELKTAQGQRRTRAIKRLEVLEAFRGSGNEPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGMIFKDTSEALLAYQNGYVHLHTRVAVH
AGSLNNQTFTEEQNKKLLLTTVGKLIFNEILPETFPYINEPTKENLEIETPVKYFVEPAT
DVAAVIKEMPLVDPFKKKILGNIIAEVFKRFKITETSKMLDRMKNLGFRHSTKAGITVGV
ADIVVLREKQEIIQEAQSKVDNVLKQFRRGLITEDERYDRVISIWSAAKDNIQAKLMKSL
DKSNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVRDDDCGTDRGLLIASLKDGTEVIEALE
ERLIGRYARRNIKHPETNEVIVPENGLITEDIAVEIVSAGIEKVWIRSAFTCNTRHGVCK
KCYGRNLATGQEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVISEIDGVVVGLNEGRDRQQEIVVQGEVESKTYTAPYTARLKVAVNDQVVR
GQELTEGSIDPKELIKVKDVTAVQEYLLREVQKVYRMQGVEIGDKHIEVMVRQMLRKVRV
IDAAETDVLPGTLLDIHQFTDANEKALLAGKMPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRRAEPYTNEEAAEDTVTVE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaacaatttcgagtatatgaaaataggtcttgcttcaccggataagata
cgttcttggtcacatggtgaagttaagaagcctgaaacgatcaactatcgtacattaaaa
ccagaaaaagacggtctattctgcgagcgcattttcggaccgacgaaagactgggaatgt
cactgtggaaagtataagcgtgttcgatacaaaggcgtggtctgtgaccgatgcggcgtt
gaagtaacacgtgcgaaagtccgccgtgaaagaatgggccatattgaacttgcagcccct
gtatcccacatttggtatttcaagggcatcccaagccgtatgggtcttgtgctggacatg
tccccgcgtgcacttgaggaagttatttacttcgcttcttatgttgtaacggatcctggc
gatacggctcttgaaaagaagcagctgctttctgaaaaagagtaccgtgcataccgtgaa
aaatacggaaacaagttccaggcatccatgggtgctgaatccattaagaagcttctttct
gacatagatctcaacaaagaagtagatacccttaaagaggaactgaaaactgcccagggc
cagcgacgcactcgtgcaatcaagcgcttggaagtacttgaagctttccgtggttctgga
aatgaaccgtcctggatgattctcgacgttcttccggttattcctccggagcttcgtccg
atggtacagctggatggcggacgctttgccacttccgacctgaatgatctataccgccgt
gtaatcaaccgcaacaaccgtttgaagcgtttattggaccttggtgctccaagcattatc
gttcagaacgaaaaacgcatgcttcaggaagctgtagatgcgctaattgataacggccgc
cgcggaagaccggtaactggaccaggaaaccgcccgttgaaatccctatcgcatatgctt
aaagggaaacaaggacgcttccgccagaacttgcttggtaagcgtgttgactattccgga
cgttcggttatcgtcgtaggaccaaacttaaaaatgtaccagtgcggacttccaaaagaa
atggcattggaattattcaagccattcgttatgaaggaattggtggagaagggcttagct
cacaacatcaaatctgcaaaacgcaaaattgaaagagtacagccggaagtttgggatgtt
cttgaaagtgttattaaagagcaccctgtattgcttaaccgtgctccaactcttcacaga
ctcggcattcaggcattcgaaccgacattggtggaaggacgcgctattcgtcttcacccg
cttgtatgtactgcttacaacgcagactttgacggtgaccaaatggctgttcacgtgccg
ctttcagctgaagcacaggcggaagcccgcttgctgatgctggcagcacagaacatcctg
aatccgaaagacggtaagccagttgttactccttctcaggatatggtactaggtaactat
tacctgacactagaaagagccggtgccgttggcgaaggtatgatttttaaagatacaagc
gaagctctgcttgcttatcaaaatggatatgtgcacttgcatacaagagtagctgtccat
gctggatccttaaataatcagactttcactgaagaacaaaataaaaagcttttattaact
acggttggtaagcttattttcaacgaaattctgcctgaaacattcccttacattaacgag
cctacaaaagaaaaccttgagattgaaactcctgtgaaatactttgtagagcctgctact
gatgtagctgccgttatcaaggaaatgcctctggtagatccgtttaagaaaaagatcctt
ggaaacatcattgcggaagtctttaaacgcttcaaaattacggaaacgtctaaaatgctt
gaccgcatgaagaaccttggattcaggcactccacaaaagccggtatcacagtcggtgtt
gctgatatcgtagtattaagggagaagcaggaaattatccaggaagcacagagcaaggtt
gataatgtattgaaacagttcagacgcggtcttattactgaagacgagcgttatgatcgt
gttatttcaatctggagtgcagcgaaagataatatccaggcaaaattaatgaagtcattg
gataaatccaacccgatcttcatgatgagtgactccggtgcccgtggtaacgcgtccaac
tttactcagttagccggaatgcgcggactgatggccaacccggctggacgtatcattgaa
ttaccgatcaaatcgagtttccgtgaaggcttaacagtactcgagtactttatttccaca
cacggtgcccgtaaaggtcttgccgatacggctcttaaaacagctgactcaggttacctt
actcgccgtcttgttgatgttgcgcaggatgtcatcgttcgcgacgacgattgcggaact
gaccgcggcttgcttatcgcatcccttaaggatggcactgaagtcattgaagcgcttgaa
gagcgtctgattggccgttatgcaagaagaaatatcaagcatcctgagacaaatgaagtg
atcgtgcctgaaaatggattgatcactgaagatattgcagtcgaaattgtttcagccggc
attgaaaaggtatggatccgttcagcattcacttgtaacacccgccatggtgtttgtaag
aagtgctacggacgcaacttagctaccggccaagaggttgaagttggtgaagcagtaggt
attatcgctgcccaatccatcggtgaaccaggtacacagttaacgatgcgtaccttccat
accggcggggtagcaggagacgatatcactcaaggtttaccgcgtatccaggaaattttc
gaagcccgtaaccctaaaggtcaggcggttatttcagagatcgatggtgtagtagtcggc
ctcaacgaaggccgtgaccgccagcaggagattgttgttcagggtgaagttgagtccaag
acctatactgcaccgtatacagcccgcttaaaagtagctgtaaacgaccaagtagtacgt
ggacaggaactgactgaaggttctattgaccctaaagagttaattaaagttaaagatgta
acagctgttcaggaatacttgctgcgtgaagttcagaaggtataccgcatgcagggtgtt
gaaatcggcgataagcacatcgaggtaatggtccgccagatgcttcgcaaagtgcgtgta
atcgatgcggcagagacagatgtgcttccaggtacactgcttgatatccatcaatttaca
gatgccaatgaaaaagcccttcttgctggtaaaatgcctgctacaggacgtccggttctg
ctgggtattacaaaagcatctcttgaaacagattcattcttatcagcagcctccttccag
gagacaacaagagttcttaccgatgcagcgatcaaaggcaagcgcgatgagcttcttggc
ctgaaagagaatgtaattattggtaagcttgtccctgccggaacaggtatgcagagatac
agaagagcagagccttatacaaatgaggaagctgctgaagatactgttactgtagaataa
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