Cytobacillus firmus: NAF01_01315
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Entry
NAF01_01315 CDS
T08260
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfir
Cytobacillus firmus
Pathway
cfir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAF01_01315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfir03019
]
NAF01_01315
03009 Ribosome biogenesis [BR:
cfir03009
]
NAF01_01315
Enzymes [BR:
cfir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NAF01_01315
Messenger RNA biogenesis [BR:
cfir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NAF01_01315
Ribosome biogenesis [BR:
cfir03009
]
Prokaryotic type
rRNA helicases
NAF01_01315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NDK
DUF4422
Motif
Other DBs
NCBI-ProteinID:
URT71178
LinkDB
All DBs
Position
243046..244524
Genome browser
AA seq
492 aa
AA seq
DB search
MTKFQDLGISPETMKSLKRMGFEEATPIQTQTIPLSLENKDLIGQAQTGTGKTAAFGIPM
IDKIDNTKEFIQGIVIAPTRELAIQVSEELYKIGYGKRTKVLSIYGGQDINRQIRALKNK
PHIIVGTPGRILDHINRKTLRLDHVHTAILDEADEMLNMGFIDDIEAILAQIPEERQTLL
FSATMPAPIRRMAERFMKDPQIVRVKAKEMTVSSIEQFYVEVHEKNKFDVLTRLLDIQSP
ELAIVFGRTKRRVDELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFINPREKSYLHVVERTTK
KKMERMDAPTLDEALEGQQKAVMEKIMQTIEENNLGSYKEAADELLAQKDASTVVQAVLK
MLTKEPDTTPVKLTEEKPLPSKRDRKPNDRSRGGYNGRGRQGGQKGSYKSRQGHTGKRPS
QNNNRSNSNSYR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaagtttcaagacttgggcatcagcccggagacaatgaaatcactgaaacgaatg
ggatttgaagaagcaactcctattcagacacagaccattccgttaagtttggagaataaa
gacctgatcgggcaggcgcagacaggaacaggaaaaacggcagcattcggaatcccgatg
atcgataaaatcgataacacgaaagagtttattcagggaattgttattgccccaacacgt
gagctggcgattcaagtatcggaagaactgtataaaatcgggtacggaaaaagaacgaaa
gtcctttccatttacggcggccaggatattaaccgccaaatccgcgctttaaagaacaaa
ccgcatatcatcgttggaacgccaggacgtattctggaccatatcaaccgcaaaactttg
cgtctggaccatgtccatacggccatccttgacgaagcggatgaaatgcttaatatggga
ttcattgacgatatcgaagcgattcttgcacaaattcctgaagagcgccaaacactgctt
ttctctgctacaatgcctgcgccaatccgcagaatggcagaacgctttatgaaggaccct
cagattgtccgcgtaaaagctaaggaaatgactgtttcatctattgaacaattctatgtt
gaagtgcatgaaaaaaataaatttgatgtgctgacaagacttctggatattcaatcaccg
gaattggcgatcgttttcggacgcacaaagcgccgtgttgatgaattggctgaagccttg
aatcttcgcggatacatggctgaaggaatccatggtgacctaagccaggctaaacggatt
tctgttctaaggaagttcaaagaggggagcatcgacgtccttgtggcaacagatgtggca
gcgcgcggattagatatttccggcgtaacacatgtctacaattttgacatccctcaggat
cctgaaagctatgttcaccgcatcggccggaccggacgtgctggaaaaacgggtgttgcg
atgacattcatcaatccgcgcgagaaatcgtacttgcatgtggtggaacgtacaactaag
aaaaaaatggaacgcatggatgctccaacactggatgaggcgcttgaaggccagcaaaaa
gctgtaatggaaaagatcatgcaaaccatcgaggaaaacaatcttggaagctataaagaa
gcggcagatgagcttctggcacaaaaggacgcttcaacagttgttcaggcagtgctgaag
atgctgacaaaggaaccggatactacgcctgttaaattaacagaggaaaagccgctgcca
tctaagcgcgacagaaagccaaatgaccgcagccgcggaggatacaatggaagaggcaga
cagggcggccaaaaaggatcatacaaatcccgccaaggccacactggaaaacgcccaagc
caaaataacaaccgttcaaacagcaacagctatagataa
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