Cytobacillus firmus: NAF01_04925
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Entry
NAF01_04925 CDS
T08260
Name
(GenBank) endonuclease VIII
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cfir
Cytobacillus firmus
Pathway
cfir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cfir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NAF01_04925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfir03400
]
NAF01_04925
Enzymes [BR:
cfir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NAF01_04925
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NAF01_04925
DNA repair and recombination proteins [BR:
cfir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NAF01_04925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
URT71811
LinkDB
All DBs
Position
934864..935673
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEMETYRRLLTEKLVPKVITDVEVNREKSINVQPAQFKSQLIHVQITQIQRRAKHL
IFKLSSGKNLLLHLMLGGWMYIGSEADNPDRTKQVIISFGDKKLYFIGLRLGYLHLLTDA
EMDKEFSHLGPEPLDHILGFPAFRELIGSRRGMLKTTFINQKFLSGIGNCYSDEICFEAG
LLPMKKADELDEDEIKILYQSMKGVLTRAIQFGGYMEEPLFKGDAKTGGYNEQCRVYDRE
GEPCLRCSSPIVKEEISSRKTFYCANCQS
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcttccggaaatggaaacctacagaaggctgttaacggagaaactggtccct
aaagtcattactgatgtagaggtaaaccgcgaaaaatcaataaatgtgcagcctgcccaa
ttcaaaagtcagctgattcatgtgcaaataacgcaaatccaaagaagggccaagcacctt
atttttaagttgagctccggtaaaaatctgctgctgcaccttatgctcgggggatggatg
tatatcggcagcgaagcggacaatcctgaccgaaccaaacaggttattatttcttttggt
gataaaaagctttattttattggactaagacttggctatttgcatttgctgacagatgca
gagatggataaggagttttcccatctgggacctgagcctctggatcacatattgggattt
ccggccttccgggaactgatcggaagcagaagaggaatgctgaaaacgacatttatcaat
cagaagtttctctccggaatcggcaactgctacagcgatgaaatctgttttgaggctgga
ctgctgccaatgaaaaaagcagatgaattggatgaggatgaaataaaaatcctgtatcag
tccatgaagggcgtattaacccgtgctattcagtttgggggctacatggaagagccctta
tttaaaggagatgccaaaaccgggggttataatgagcagtgcagggtctatgacagagaa
ggagaaccatgcctccgctgcagcagccctatagtcaaagaagaaatatcctcacggaaa
acgttctattgtgcaaattgccaaagctag
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