Cytobacillus firmus: NAF01_05410
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Entry
NAF01_05410 CDS
T08260
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cfir
Cytobacillus firmus
Brite
KEGG Orthology (KO) [BR:
cfir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cfir03009
]
NAF01_05410 (rlmD)
Enzymes [BR:
cfir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NAF01_05410 (rlmD)
Ribosome biogenesis [BR:
cfir03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NAF01_05410 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
Cons_hypoth95
UPF0020
Methyltransf_11
Methyltransf_12
Ubie_methyltran
PDT
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
URT71902
LinkDB
All DBs
Position
1027419..1028807
Genome browser
AA seq
462 aa
AA seq
DB search
MKQEQTAKLKLKQTFPLTIKRLGINGEGVGYFKRQVVFVPGALPGEEIVAEATKVNPKFS
EAKIKKIRKKSEFRVQPPCPVYHECGGCQLQHLRYDQQLKEKRDIIIQALERHTKLNPEK
LDIKETIGMEDPWSYRNKSQFQVGQKDGKVLAGLYGMNSHRLINIEHCAVQHPQTTKATE
TVKGILQDLRIPIYNERNRKGIVRTIVARVGIQTGELQIVLITAQKELPKKEIIIEKIKS
ELPEVKSIIQNVNGEKTSIIFGQETTNLDGSDFIQETLGDLQFELSARTFFQLNPEQTVK
LYNEVKRAAALTGKEKVADAYCGVGTIGLWVAEQAAEIRGMDIIRESIEDAKKNAARHGI
KHAQYVVGKAEEWLPKWTKEGWKPDVIIVDPPRTGLDQQLLKTILKVQPKKVVYVSCNPS
TLAKDISVLSSKYKVNGIQPVDMFPQTAHVECVAQLILKEGN
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaagaacaaacagctaaattaaaactaaagcagacgttcccgctgacaattaaa
aggcttggcatcaatggtgaaggtgtcggatattttaaaaggcaggttgtatttgtacct
ggggcactgcctggcgaggaaatcgtagcagaagccacaaaggtaaatccaaagttttct
gaggccaaaatcaagaaaatccgcaaaaaatcggagttccgcgtccagcccccatgcccg
gtctatcatgaatgcggcggctgccagctgcagcatctccgctatgatcagcagctgaag
gaaaagcgggatatcattattcaagctttagaacggcacaccaagctgaatcctgagaag
ctggatataaaagagaccattggaatggaagatccatggagctacagaaataaaagccag
ttccaggttggccaaaaagacgggaaggtgctggccggtttatatggcatgaattcgcac
cgcctgattaatattgagcactgtgcggtccagcatccgcagacaacaaaggcgacagaa
acagtgaaggggattctccaggacctgcgaatccccatttataatgagagaaaccgcaaa
ggcatcgtgagaaccatcgttgccagggtggggatacagacaggcgaactgcagatcgta
ttaattacagctcaaaaagagcttcctaaaaaagaaatcattatcgaaaaaataaaaagt
gagctgcctgaagtaaagtccatcatccaaaacgtgaacggtgaaaaaacctccattatt
tttggacaggaaaccacgaatctggatggaagcgactttatccaggaaacacttggagac
cttcaatttgaactatcggcacggactttcttccagctgaaccctgaacagaccgtcaaa
ctttataatgaagtcaaaagagcagcggctttaaccggcaaggaaaaagtagctgacgca
tactgcggtgtcggaacgatcggactatgggtagctgagcaggcagccgaaatccgcggc
atggatatcatcagggaatccattgaagacgccaagaaaaatgcggcccgccatggaatt
aagcatgcccaatacgtggtcggcaaagcagaagaatggcttccgaaatggacaaaagaa
ggctggaagccggacgtcatcatcgtcgatccgccaagaacaggactggatcagcagctg
ttaaagactattttgaaagtccagccaaagaaagtggtttatgtatcgtgtaatccatca
acattggcgaaagatatttcggtcttgagctccaaatataaagtaaatggcatccagcct
gtggatatgtttccgcagacggcgcatgttgagtgtgtggcacagctcattttaaaagaa
ggcaactaa
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