Cytobacillus firmus: NAF01_09150
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Entry
NAF01_09150 CDS
T08260
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cfir
Cytobacillus firmus
Brite
KEGG Orthology (KO) [BR:
cfir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfir03032
]
NAF01_09150 (topA)
03400 DNA repair and recombination proteins [BR:
cfir03400
]
NAF01_09150 (topA)
Enzymes [BR:
cfir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NAF01_09150 (topA)
DNA replication proteins [BR:
cfir03032
]
Prokaryotic type
DNA Topoisomerases
NAF01_09150 (topA)
DNA repair and recombination proteins [BR:
cfir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NAF01_09150 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
URT72589
LinkDB
All DBs
Position
1766561..1768636
Genome browser
AA seq
691 aa
AA seq
DB search
MSEFLVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGIDVENNFEPKYITIRGK
GPVLKELKTAAKKAKKIYLAADPDREGEAIAWHLAHSLDMDIKSDCRVVFNEITKDAIKE
SFKHPRPINMDLVDAQQARRMLDRLVGYNISPLLWKKVKKGLSAGRVQSVAVRLIIDREK
EIKDFIPEEYWSIDGEFLKGKTAFDASFYGFKNEKVELKSESEVQNILSKMKGNKFKVES
VTKKERKRNPAAPFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIELGKEGTVGLITYMR
TDSTRISEIAQSEAADYIQSSYGKEFLQSEKKKEKKNSNAQDAHEAIRPTSTLKSPASLK
EYLSRDQLRLYRLIWERFIASQMAPAVMDTMSVDLKNGEVIFRATGSKVKFPGFMKVYVE
GTDDQSEEKDNMLPDLKEGDEVLKKDIEPKQHFTQPPPRYTEARLVKTLEEQGIGRPSTF
APTLDTIQKRGYVALDNKRFIPTELGEIVLELIMEFFPEILDIEFTAKMEKDLDYVEEGK
VNWVQIINDFYIDFEKNLKIAEKEMQEVEIKDEPAGEDCEQCGNPMVFKMGRYGKFMACS
NFPDCRNTKPIVKDIGVKCPKCEEGNIIERKSKKRRIFYGCDRFPECDFISWDKPLPRSC
PKCDNLLVEKKLKKGVQVQCVECDYKEEKQS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtttcttgttatcgttgagtcacctgcaaaggcaaaaacgattgagcgttat
ttaggaaaaaaatataaagtaaaagcttccatgggacatgtcagggatcttcccaaaagc
caaatgggcattgatgtggaaaataactttgaacccaaatacataacaattcgcggaaag
ggccctgttttaaaggagcttaagacagcggccaaaaaagctaaaaaaatttatctcgcg
gctgaccccgacagagaaggagaagctattgcctggcatttggcacatagcctggatatg
gatattaagtcggattgccgtgttgtttttaatgaaatcactaaagatgccattaaagaa
tcctttaagcatccaaggccaatcaacatggatcttgttgatgcgcagcaggcaagaagg
atgctggacagactggtcggctataatatcagccccttactatggaagaaagtgaaaaaa
ggattaagtgcggggagagtccagtctgttgcagtccgattgatcatcgaccgtgaaaag
gaaattaaggactttataccagaagagtactggtccattgatggagagttccttaaagga
aaaacagcctttgatgcatcattttacggatttaagaatgaaaaagtggaattgaagtcg
gaaagcgaagttcaaaatattttaagtaaaatgaagggcaataaattcaaggtggaatcg
gtcaccaagaaggaaagaaagcggaatcctgcagccccttttactacgtcatcacttcag
caggaagctgcaagaaaattaaatttccgtgccaagaaaacgatgatgcttgcacagcag
ctatatgaaggaattgaactcggcaaggaaggaactgtcggtttaatcacttatatgaga
accgactcaacacgcatatccgaaattgcacaaagtgaagctgcagactatattcaaagc
tcttacgggaaagagttcctgcagagtgaaaagaaaaaagaaaagaaaaacagcaatgcc
caggatgcccatgaggccatccgcccgacaagcacattaaagtcgcctgcaagtttaaaa
gaatacttgtcgcgtgatcagctgcgattatacaggcttatctgggaacgctttattgca
agccaaatggcaccagcggttatggacaccatgagtgtcgatctgaaaaatggtgaagtg
atcttccgggcgacaggctcaaaagtgaaattcccaggattcatgaaagtatatgttgaa
ggcactgatgaccagtcggaggaaaaagataatatgctccctgatctgaaggaaggggat
gaagtccttaaaaaagacatcgaacctaaacagcactttacacagccacctccaaggtat
actgaggcaaggctggtaaaaacacttgaagaacagggcattgggcggccatccaccttc
gcaccgacacttgatacaatccaaaaacggggctatgttgctctggataataaacgtttt
attccgaccgaactgggtgaaatcgttctagaattaatcatggaattcttccctgagatc
cttgatatcgagtttaccgcaaaaatggaaaaagatctggactatgttgaagaaggcaaa
gtcaactgggtacagatcattaatgatttctatatagattttgaaaaaaatcttaaaata
gcggaaaaggaaatgcaggaagtagaaattaaggatgaacctgccggtgaggattgcgaa
caatgcggcaatcctatggtgttcaagatgggacgctatggaaagttcatggcctgcagc
aatttccctgactgccgcaatactaaaccgattgtcaaggatatcggtgtgaaatgtcca
aagtgcgaagaaggtaatatcattgaaagaaaaagcaaaaaacgccggatcttctacggc
tgtgacaggttccctgaatgtgactttatttcttgggataagcccctgccgagaagctgt
ccgaaatgtgataacctgctggttgagaaaaaactcaaaaaaggtgttcaggttcagtgt
gttgaatgcgactataaggaagaaaagcaaagttaa
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