Cytobacillus firmus: NAF01_12040
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Entry
NAF01_12040 CDS
T08260
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
cfir
Cytobacillus firmus
Pathway
cfir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cfir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NAF01_12040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfir03400
]
NAF01_12040
Enzymes [BR:
cfir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
NAF01_12040
DNA repair and recombination proteins [BR:
cfir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
NAF01_12040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Rv0313_N
Motif
Other DBs
NCBI-ProteinID:
URT73132
LinkDB
All DBs
Position
complement(2364686..2365441)
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AA seq
251 aa
AA seq
DB search
MKLVSWNVNGIRACVKKGFIDYFKEMDADIFCIQESKLQEGQIELILDGYHQYWNYALKK
GYSGTAVFTKKEPISVRYGLGEEETEPEGRILTLEYEDFYLVNVYTPNSKRDLARLPYRL
EWEERIREYLLELDGIKPVIMCGDLNVAHNEIDLKNAKSNRGNSGFTDEERDRMTRLLGS
GFVDAFRYKYPEAEGAYTWWSYMAKVRERNIGWRIDYFIISEKLQEKIIDSQIHCDIMGS
DHCPVALKMDL
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcgtatcatggaatgtgaatggcattagggcctgtgtgaaaaaaggcttcatc
gattacttcaaagagatggatgcagacatcttttgtatccaggagtctaaattacaggag
gggcagattgagctcatcctggatggctaccaccaatattggaattatgctctgaaaaaa
gggtattccgggacagctgttttcacgaaaaaagagccgatttctgttcgctatgggttg
ggcgaagaggaaacagaacccgagggcaggattcttacgcttgagtatgaagacttttat
ctcgtgaatgtctatacaccgaattcgaagcgtgacctggcccgccttccatatcgtctg
gaatgggaagagcggattagggagtatttacttgagctggatggaatcaagcctgttatt
atgtgcggtgacttaaatgtggcccataatgaaatagatttaaagaatgcaaaatccaat
cgcggaaattccgggtttaccgatgaagaacgcgacagaatgaccagattgcttggttca
gggtttgttgatgctttccgctataaatacccggaagccgagggagcctatacatggtgg
tcctatatggcaaaagtaagggagaggaatatcggctggcggattgattattttataatt
tctgaaaagcttcaggaaaaaataatagattcacaaattcattgcgacattatgggaagc
gaccattgcccggtagcccttaaaatggatctatag
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