Cytobacillus firmus: NAF01_16470
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Entry
NAF01_16470 CDS
T08260
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfir
Cytobacillus firmus
Pathway
cfir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAF01_16470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfir03019
]
NAF01_16470
03009 Ribosome biogenesis [BR:
cfir03009
]
NAF01_16470
Enzymes [BR:
cfir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NAF01_16470
Messenger RNA biogenesis [BR:
cfir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NAF01_16470
Ribosome biogenesis [BR:
cfir03009
]
Prokaryotic type
rRNA helicases
NAF01_16470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
DUF4422
NDK
AAA_22
AAA_19
Flavi_DEAD
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
URT69391
LinkDB
All DBs
Position
complement(3263615..3265069)
Genome browser
AA seq
484 aa
AA seq
DB search
MTTFSDFGLSNEIVKALSNMGFEEPTPIQAQAIPIGMQGKDMIGQAQTGTGKTTAFGVPL
LEQIDLNEGIQGLVLAPTRELAVQVAEELNRIGQVKGVRTLPVYGGQDISRQIRALKKHP
HIIAATPGRLIDHIERKTIRLSNIKMVVLDEADEMLNMGFIEDIERILSEIKGERQTLLF
SATMPRRIQTLAEKFMQEPEMVKVKAKEMTVKNIEQYYMETHEKQKFDVLCNLLDIQSPE
LAIVFGRTKKRVDEVVEGLIKRGYSAEGIHGDIPQAKRDQVIRRFKEQTIDIMVATDVAA
RGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGNKGLAITFVSPREIDHLKIIENVTKS
KMAKKPVPSFKDVVAGNQQATINKLMEVIEKEEYADFKRVAENLLEDTDSVTLLAAAFKL
LTKGPDVTPVKLTAVEPIRVRKPKGDRGGRRFSDRSRGGGRDRRDFKGGRDRRSSKPRSN
SNKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
ttgacaactttttcagattttggcttaagtaatgaaatagtaaaagctctttccaatatg
ggcttcgaggaaccaacaccaattcaggcacaggcgattccaatcggaatgcaggggaag
gacatgatcggccaggcgcagactggaactggaaaaaccactgctttcggtgtaccgctt
ttagagcagattgatttaaacgaaggaattcaaggccttgtccttgctccaacgagggag
cttgccgtacaggtagctgaagaattaaaccgtataggacaggtaaaaggtgtccggaca
cttcctgtttacggcggtcaggatattagccgccaaatacgtgcacttaaaaaacacccg
catatcattgcagctacaccaggaagattaattgaccatattgaaagaaaaacaatccgc
ttaagcaatatcaaaatggtcgttctggatgaagcggatgaaatgctcaatatgggattc
atcgaggatatcgaaagaattctaagtgaaattaaaggggagcgccaaaccctgcttttc
tctgctacaatgccgagaagaattcagacccttgctgaaaaattcatgcaggagcctgaa
atggttaaagtgaaagcgaaagaaatgacagttaaaaatattgaacagtattatatggaa
acgcatgaaaaacaaaaatttgatgtgctttgcaatcttctggatatccaatcacctgag
ctggcgattgtatttggcagaaccaaaaagcgtgtggatgaagtggtggaaggactcatt
aagagaggatattcggctgaaggaattcatggcgatattccacaggcgaaaagagatcag
gtaatccgccgatttaaagagcagacaatcgatattatggtggcgactgatgttgctgcc
cgaggccttgatatttcaggcgtctcccatgtttataacttcgatatcccgcaggatcct
gaaagctatgttcaccggattggacgtacaggccgtgctggaaacaaggggcttgcgatt
acattcgtttctccaagagaaattgaccacctgaaaataattgaaaatgttacaaagagt
aagatggcgaaaaagcctgttccttcctttaaggatgttgttgcaggcaatcagcaggcg
actattaataaacttatggaagttattgaaaaagaagaatatgcagacttcaagagagtg
gcggaaaatcttcttgaagatacagattctgttactttgcttgctgcagcctttaaattg
ctgactaaaggtcctgatgtaacaccggttaaattaactgcggtcgaacctatccgtgtc
agaaaacctaaaggtgatcgcggaggaagaagattcagcgacagatccagaggcggcgga
cgcgatagaagagattttaaaggcggccgggacagacggagcagtaagccgcgcagcaat
agcaataaggggtaa
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