Cytobacillus firmus: NAF01_19890
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Entry
NAF01_19890 CDS
T08260
Symbol
mutM
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cfir
Cytobacillus firmus
Pathway
cfir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cfir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NAF01_19890 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfir03400
]
NAF01_19890 (mutM)
Enzymes [BR:
cfir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NAF01_19890 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NAF01_19890 (mutM)
DNA repair and recombination proteins [BR:
cfir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NAF01_19890 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_8
Zn_Ribbon_TF
DUF7573
Motif
Other DBs
NCBI-ProteinID:
URT70042
LinkDB
All DBs
Position
complement(3927885..3928712)
Genome browser
AA seq
275 aa
AA seq
DB search
MPELPEVETVRRTLQQLVIGKTISHVSVFWPKMVKHPEELAQFKDALAGQTFQDIGRRGK
FLILYTFDYALVSHLRMEGRYGLYSKEEPAEKHTHVIFHFTDGTELRYKDVRKFGTMHLY
AKGEELKALPLAHLGPEPFAEEFTVDDLAARLARTSRHVKTALLDQKTIVGLGNIYVDEA
LFRSRIHPERAANSLTRTELETLHKEIGDTLREAVDKGGSTIRSYVNSQGQIGMFQLELF
VYGRKGEGCKVCGSTLERIVTGGRGTVFCPACQRK
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcctgaagttgaaacggtcagaagaacattgcagcaattggtgatcggc
aaaaccatttcacatgtttcggttttctggcctaagatggttaagcatcccgaagagctt
gctcaattcaaggatgctttagcaggccaaacctttcaggacattggcaggagagggaaa
ttcctaatcctctacacctttgactatgcacttgtgtcccacctgagaatggagggcaga
tacggcctttactccaaagaagaacctgctgaaaaacacactcatgtcattttccatttt
acagatggcactgaactcagatacaaagatgttcgtaaatttggaacgatgcacctatat
gcaaagggtgaagaacttaaggcacttcctctggcacatttgggaccggaaccatttgca
gaagaatttacggtggacgaccttgctgcccggcttgcccggacctcccgccatgtcaaa
acagcgcttctagatcagaaaacgatcgtagggcttggcaatatatatgtggatgaagct
ttattccgttctcgaattcatcctgaaagagcggcaaatagcttaacaagaaccgaattg
gagacacttcacaaagaaattggagataccctgagagaagcggtagataaaggaggaagc
accattcgctcctatgttaattcccagggacaaattggcatgttccagcttgagcttttt
gtttatgggagaaaaggggaaggttgcaaagtgtgcggaagcacacttgagcggatcgta
accgggggcaggggtacagtattctgtccggcttgccagagaaaataa
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