Colletotrichum fioriniae: CFIO01_03365
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Entry
CFIO01_03365 CDS
T04796
Name
(GenBank) WD domain-containing protein
KO
K15542
polyadenylation factor subunit 2
Organism
cfj
Colletotrichum fioriniae
Pathway
cfj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CFIO01_03365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfj03019
]
CFIO01_03365
Messenger RNA biogenesis [BR:
cfj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CFIO01_03365
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
WD40_RFWD3
ASA1
Beta-prop_NOL10_N
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
CFAP251_N
Beta-prop_WDR75_1st
Beta-prop_ACSF4
PEP5_VPS11_N
PAC11
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-ProteinID:
EXF78708
UniProt:
A0A010S2B0
LinkDB
All DBs
AA seq
648 aa
AA seq
DB search
MAYDPRGDHHGRRGGGGGPGGDGDGQDGGFVRARGRRPVTDYGSTVANWMRHRSPLDGDA
YTGEVERPSASFIVDFIPPAARRTDPGDTIPVKHLHSSLNKIKHPVNVVRWTPEGRRLLT
ASSSGEFTLWNGTGFNFETIMQAHDSAIRALAYSHNDDWLISADHDGSVKYWQPNFNNLQ
SIAAHNDPVRDLAFSPNDSKFVTACDDSTLKIFDFAGGVEESTLKGHGWDAKSCDWHPTK
GLLVSGSKDHLVKLWDPRTGRCLTTLHGHKNTITKTLFEKVQGDCLATSARDQTARVFDL
RMMRDICLLKGHEKDISTIAWHPVHSNLLSTGGHDGSLYHYILDEPNTPAGHANSVAPYD
SSDPSTTPAQTIYPAHKVPFAHDFAIWSLDWHPLGHILASGSNDRITRFWSRKRPGDADV
FQDRYHVGEAAAEANGTWDRRGGRRQRQEEEEMEMEDEMDGLVDQKMPLKQPMVPGFPGL
PGLPGLPGLPGLSMPQNGGAGGPVPPPPMIPGVGGAGGAPPPPLPFPLPGLNGAPPPPMI
PGLPGGIDPSNPADLAKIAEMIQKAGGTLPPPPPGGFAPPPGMVPPPNFVPPPGFPPMPM
SMPPPSGANNNHRDRDDHGGRGGRRAPLPSQEESLKQEQRRGNYTRSR
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatgatcctcgaggggatcaccatggcaggagaggaggaggaggaggcccaggc
ggcgatggagacggtcaagatggcggttttgtgagagcaaggggtcgacgtcctgttact
gattatggctcaaccgtcgccaattggatgcgccatcgctcgccacttgacggcgatgca
tacacaggagaagtcgagaggcctagtgccagcttcatcgttgacttcataccacccgcc
gcgaggaggacagatcctggcgacacaatcccagtgaagcacctccactcatcactgaac
aagatcaagcacccggtcaacgtcgtccggtggacgccagaaggccgtcgtttgttgacc
gcgtcgagcagtggagagttcacattatggaacggtaccggattcaacttcgagaccatt
atgcaggcccacgattccgccatcagagccctcgcctactctcacaacgacgactggctc
atctctgccgaccacgacggaagcgtcaagtactggcagcccaacttcaacaatctccag
agcatcgctgcgcataacgatccggttagagacctcgcattcagccccaacgactccaaa
ttcgtgacagcatgcgacgactcgacgctcaagatttttgattttgctggaggagtggag
gagtcgaccctcaagggccacggctgggacgccaagagctgcgattggcatcccacaaag
ggcttgttagtatcgggctcaaaagaccatctggtcaagctgtgggatcccaggacaggc
cgatgcctgaccaccctccacggccacaaaaacacaatcacaaaaacgctgttcgaaaag
gtccagggcgactgcctggcaacgtcagcacgagaccagacggctcgcgtttttgatctc
cgaatgatgcgcgatatctgcctgctcaagggacacgaaaaggacatttcgaccatcgcc
tggcacccagtccactccaatctcctcagcacaggcggtcacgacggctccttgtaccac
tacatcctagacgagcccaacacgcccgccggccacgcaaactccgtagcgccttacgac
agctccgacccgtcgacgaccccggcgcagacgatataccccgcccacaaggtccccttt
gcccacgactttgccatctggtccctcgactggcacccgctcggccacatcctcgcctcg
ggctcaaacgaccgcatcacgcgcttctggtcccgcaagcggcccggcgacgccgacgtc
ttccaggaccgctaccacgtcggcgaggccgctgccgaggccaacggcacatgggaccgc
cggggcgggcgccgccagcgccaggaggaggaggaaatggagatggaagatgagatggac
ggcctcgtcgaccagaagatgcccctcaagcagcccatggtccccggattcccaggcctc
cctggtctaccgggactgccgggcctgccgggcctctcgatgccgcagaacggcggcgca
ggcggtcctgtcccgccaccgcccatgatcccgggcgtcggcggcgcaggcggcgcgccc
cctccgcccctgccattccccctgcccggcctcaacggtgcgccgccgccgcccatgatt
ccaggtctaccgggcggcatcgacccgagtaacccggccgacctggccaagattgccgaa
atgattcaaaaggcgggcggcaccttacctcccccgccaccgggcggcttcgcgccgccg
cctggcatggtgccaccgccgaatttcgtgccgccgccgggcttcccccccatgcccatg
tccatgccgccgccttctggcgcgaataacaaccatagagatcgtgacgaccacggtggt
cgtggtggtaggcgggctccgcttcctagtcaggaggagagtcttaagcaagagcagcga
cggggaaactacacgcggtcccgttaa
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